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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.522805 (24 seq.)
>WENV180441740
OBWW01001208
[OBWW] human gut metagenome; faeces
8161
8235
+
Ala
CGC
[ENA]
¡û
>WENV183205360
OLPZ01007343
[OLPZ] human gut metagenome; faeces
4349
4277
-
Ala
CGC
[ENA]
¡û
>WENV183217957
OLQI01004985
[OLQI] human gut metagenome; faeces
4455
4383
-
Ala
CGC
[ENA]
¡û
>W09128031
ACLL01000005
Bacillota
Limosilactobacillus antri DSM 16041 [ACLL]
5316
5244
-
Ala
CGC
[ENA]
¡û
>W1911502685
OEPY01000002
Bacillota
Lactobacillus timonensis Marseille-P3825 [OEPY]
1301011
1301085
+
Ala
CGC
[ENA]
¡û
>W2010273722
CABKUX020000012
Bacillota
Lactobacillus antri [CABKUX]
5787
5715
-
Ala
CGC
[ENA]
¡û
>W2011161082
OEPY01000002
Bacillota
Lactobacillus timonensis Marseille-P3825 [OEPY]
1301011
1301085
+
Ala
CGC
[ENA]
¡û
>W2110101140
CAJFMA010000006
Bacillota
Lactobacillus oris [CAJFMA]
4498
4426
-
Ala
CGC
[ENA]
¡û
>W2110315908
JADGID010000017
Bacillota
Limosilactobacillus oris DSM 108973 [JADGID]
4526
4454
-
Ala
CGC
[ENA]
¡û
>W10102081
ACOH01000026
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
4296
4368
+
Ala
CGC
[ENA]
¡û
>C231491033
CP104398
Bacillota
Limosilactobacillus oris AM_LB10 [CP104398]
1603058
1602986
-
Ala
CGC
-
¡û
>C241097715
CP045530
Bacillota
Limosilactobacillus pontis LP475 [CP045530]
164009
163937
-
Ala
CGC
-
¡û
>W2130004020
CABFLO010000045
Bacillota
Limosilactobacillus oris [CABFLO]
8121
8195
+
Ala
CGC
[ENA]
¡û
>C241260480
CP125629
Bacillota
Limosilactobacillus oris BSLO1801 [CP125629]
221513
221441
-
Ala
CGC
-
¡û
>W11102237
ACOH01000026
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
4296
4368
+
Ala
CGC
[ENA]
¡û
>W11139768
AEKL01000064
Bacillota
Limosilactobacillus oris PB013-T2-3 [AEKL]
4400
4328
-
Ala
CGC
[ENA]
¡û
>W1610034021
AZDK01000002
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
5787
5715
-
Ala
CGC
[ENA]
¡û
>W1610035901
AZEW01000043
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
507
433
-
Ala
CGC
[ENA]
¡û
>W1610037649
AZGE01000038
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
8065
8139
+
Ala
CGC
[ENA]
¡û
>W1610038137
AZGO01000050
Bacillota
Limosilactobacillus pontis DSM 8475 [AZGO]
3901
3829
-
Ala
CGC
[ENA]
¡û
>W1710031148
AZDK01000002
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
5787
5715
-
Ala
CGC
[ENA]
¡û
>W1710032940
AZEW01000043
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
507
433
-
Ala
CGC
[ENA]
¡û
>W1710034688
AZGE01000038
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
8065
8139
+
Ala
CGC
[ENA]
¡û
>W1710035129
AZGO01000050
Bacillota
Limosilactobacillus pontis DSM 8475 [AZGO]
3901
3829
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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