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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.522964 (48 seq.)
>W1711108379
LTTS01000017
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
158789
158861
+
Thr
GGT
[ENA]
¡û
>W1711114877
LTZR01000026
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
21950
21875
-
Thr
GGT
[ENA]
¡û
>W1711187008
LWOS01000004
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
57467
57542
+
Thr
GGT
[ENA]
¡û
>W1711431570
MIJY01000001
Bacillota
Enterococcus termitis [MIJY]
179414
179342
-
Thr
GGT
[ENA]
¡û
>W1712067736
NGLE01000001
Bacillota
Enterococcus sp. 4G2_DIV0659 [NGLE]
472588
472516
-
Thr
GGT
[ENA]
¡û
>W1712097209
NIBQ01000002
Bacillota
Enterococcus sp. 9D6_DIV0238 [NIBQ]
843327
843255
-
Thr
GGT
[ENA]
¡û
>W131027604
AJAL01000020
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
302272
302344
+
Thr
GGT
[ENA]
¡û
>W131027998
AJAU01000013
Bacillota
Enterococcus caccae ATCC BAA-1240 [AJAU]
33862
33790
-
Thr
GGT
[ENA]
¡û
>W131201022
ASVV01000002
Bacillota
Enterococcus caccae ATCC BAA-1240 [ASVV]
410239
410167
-
Thr
GGT
[ENA]
¡û
>W131201627
ASWF01000001
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
350634
350706
+
Thr
GGT
[ENA]
¡û
>W131209199
ATIO01000091
Bacillota
Enterococcus faecalis 13-SD-W-01 [ATIO]
12690
12762
+
Thr
GGT
[ENA]
¡û
>WENV180406761
OBUQ01000054
[OBUQ] human gut metagenome; faeces
149479
149551
+
Thr
GGT
[ENA]
¡û
>WENV182945088
OKVJ01010332
[OKVJ] human gut metagenome; human gut
1273
1345
+
Thr
GGT
[ENA]
¡û
>WENV182953080
OKVX01003390
[OKVX] human gut metagenome; human gut
4027
3955
-
Thr
GGT
[ENA]
¡û
>WENV182986795
OKZY01003354
[OKZY] human gut metagenome; human gut
460
388
-
Thr
GGT
[ENA]
¡û
>WENV170541336
CXPN01000154
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
232
304
+
Thr
GGT
[ENA]
¡û
>WENV170541634
CXPR01000330
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
1338
1266
-
Thr
GGT
[ENA]
¡û
>W1910617278
LHUG01000007
Bacillota
Enterococcus canintestini 49 [LHUG]
49473
49546
+
Thr
GGT
[ENA]
¡û
>W1910899426
NGJS01000004
Bacillota
Vagococcus sp. SS1995 [NGJS]
121415
121487
+
Thr
GGT
[ENA]
¡û
>W2010277224
CABLCA020000003
Bacillota
Enterococcus raffinosus [CABLCA]
16793
16721
-
Thr
GGT
[ENA]
¡û
>W2010287060
CABMMG010000020
Bacillota
Enterococcus caccae [CABMMG]
33783
33711
-
Thr
GGT
[ENA]
¡û
>W2010324463
CACSLH010000028
Bacillota
Enterococcus sp. CSURQ0835 [CACSLH]
29588
29662
+
Thr
GGT
[ENA]
¡û
>W2010773932
LHUG01000007
Bacillota
Enterococcus canintestini 49 [LHUG]
49473
49546
+
Thr
GGT
[ENA]
¡û
>W2010958327
NGJS01000004
Bacillota
Vagococcus sp. SS1995 [NGJS]
121415
121487
+
Thr
GGT
[ENA]
¡û
>W2011950867
UWOP01000001
Bacillota
Enterococcus sp. Marseille-P4358 [UWOP]
658312
658384
+
Thr
GGT
[ENA]
¡û
>W2012499959
WXOO01000005
Bacillota
Enterococcus raffinosus BIOML-A1 [WXOO]
6155
6083
-
Thr
GGT
[ENA]
¡û
>W2110158398
JAASIQ010000003
Bacillota
Enterococcus raffinosus K36 [JAASIQ]
16889
16817
-
Thr
GGT
[ENA]
¡û
>W2110210893
JACFUC010000004
Bacillota
Enterococcus sp. S23 [JACFUC]
101680
101608
-
Thr
GGT
[ENA]
¡û
>W2110210921
JACFUD010000004
Bacillota
S22(2020) [JACFUD]
101680
101608
-
Thr
GGT
[ENA]
¡û
>W2110512869
JAFLVT010000016
Bacillota
Enterococcus sp. MJM12 [JAFLVT]
48540
48613
+
Thr
GGT
[ENA]
¡û
>W2110512891
JAFLVU010000006
Bacillota
Enterococcus sp. DIV0242_7C1 [JAFLVU]
395484
395412
-
Thr
GGT
[ENA]
¡û
>C211315427
CP072888
Bacillota
Enterococcus raffinosus F162_2 [CP072888]
653184
653112
-
Thr
GGT
-
¡û
>C211388395
CP081846
Bacillota
Enterococcus raffinosus CX012922 [CP081846]
575061
574989
-
Thr
GGT
-
¡û
>C231490805
CP104392
Bacillota
Enterococcus raffinosus HG-5 [CP104392]
628649
628577
-
Thr
GGT
-
¡û
>C231498028
CP104762
Bacillota
Enterococcus raffinosus ATCC 49464 [CP104762]
640584
640512
-
Thr
GGT
-
¡û
>C231498095
CP104764
Bacillota
Enterococcus raffinosus Er676 [CP104764]
593514
593442
-
Thr
GGT
-
¡û
>C241006785
AP022822
Bacillota
Enterococcus saigonensis VE80 [AP022822]
665261
665188
-
Thr
GGT
-
¡û
>W2310006756
AMDP01000021
Bacillota
Enterococcus sp. 5H [AMDP]
17790
17718
-
Thr
GGT
[ENA]
¡û
>W1610021435
ATKJ02000003
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
16793
16721
-
Thr
GGT
[ENA]
¡û
>W1610066532
BCPU01000046
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
13320
13392
+
Thr
GGT
[ENA]
¡û
>W1610462489
FKLT01000104
Bacillota
Enterococcus faecium [FKLT]
277
202
-
Thr
GGT
[ENA]
¡û
>W1710018130
ATKJ02000003
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
16793
16721
-
Thr
GGT
[ENA]
¡û
>W1710063870
BCPU01000046
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
13320
13392
+
Thr
GGT
[ENA]
¡û
>W1710461659
FKLT01000104
Bacillota
Enterococcus faecium [FKLT]
277
202
-
Thr
GGT
[ENA]
¡û
>W1710659165
JXKG01000019
Bacillota
Enterococcus canintestini [JXKG]
440
367
-
Thr
GGT
[ENA]
¡û
>W1710659227
JXKJ01000020
Bacillota
Enterococcus caccae [JXKJ]
33783
33711
-
Thr
GGT
[ENA]
¡û
>W1710659777
JXLA01000044
Bacillota
Enterococcus raffinosus [JXLA]
16841
16769
-
Thr
GGT
[ENA]
¡û
>W1710659928
JXLF01000001
Bacillota
Enterococcus termitis [JXLF]
409390
409462
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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