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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523795 (54 seq.)
>W1710861917
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
239602
239677
+
Thr
CGT
[ENA]
¡û
>W1710862182
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1381143
1381068
-
Thr
CGT
[ENA]
¡û
>W1710863443
LMFD01000001
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
25233
25158
-
Thr
CGT
[ENA]
¡û
>W1710864126
LMFQ01000008
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
70472
70547
+
Thr
CGT
[ENA]
¡û
>W1710864491
LMFX01000029
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
32626
32551
-
Thr
CGT
[ENA]
¡û
>W1710865951
LMHC01000001
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
260902
260977
+
Thr
CGT
[ENA]
¡û
>W1710866022
LMHD01000022
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
287702
287627
-
Thr
CGT
[ENA]
¡û
>W1710866792
LMHT01000031
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
86103
86028
-
Thr
CGT
[ENA]
¡û
>W1710867701
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1304697
1304622
-
Thr
CGT
[ENA]
¡û
>W1711386065
MEEW01000010
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
25419
25494
+
Thr
CGT
[ENA]
¡û
>W131160780
AQWW01000204
Alphaproteobacteria
Caulobacter sp. JGI 0001013-D04 [AQWW]
27527
27602
+
Thr
CGT
[ENA]
¡û
>W131226686
AUEO01000010
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
175284
175209
-
Thr
CGT
[ENA]
¡û
>W1711501198
MKRI01000081
Alphaproteobacteria
Caulobacterales bacterium 68-7 [MKRI]
7000
6925
-
Thr
CGT
[ENA]
¡û
>w018493
AATH01000002
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
116297
116372
+
Thr
CGT
[ENA]
¡û
>WENV180016617
FSVN01000371
[FSVN] metagenome; soil
2943
3018
+
Thr
CGT
[ENA]
¡û
>WENV180017082
FSWM01000164
[FSWM] metagenome; soil
5790
5715
-
Thr
CGT
[ENA]
¡û
>WENV180017108
FSWM01000353
[FSWM] metagenome; soil
39947
40022
+
Thr
CGT
[ENA]
¡û
>WENV180017343
FSWT01000729
[FSWT] metagenome; soil
4323
4398
+
Thr
CGT
[ENA]
¡û
>WENV180017427
FSWZ01000206
[FSWZ] metagenome; soil
3320
3395
+
Thr
CGT
[ENA]
¡û
>WENV180018801
FTAI01001782
[FTAI] metagenome; soil
3404
3479
+
Thr
CGT
[ENA]
¡û
>WENV180023835
FTIF01001188
[FTIF] metagenome; soil
5427
5502
+
Thr
CGT
[ENA]
¡û
>WENV180026231
FTIR01452726
[FTIR] metagenome; soil
21963
22038
+
Thr
CGT
[ENA]
¡û
>WENV180028144
FTJA01000112
[FTJA] metagenome; soil
3953
3878
-
Thr
CGT
[ENA]
¡û
>WENV180030606
FTJN01000889
[FTJN] metagenome; soil
29239
29314
+
Thr
CGT
[ENA]
¡û
>WENV180694633
OCZS012505332
[OCZS] soil metagenome; soil
96
171
+
Thr
CGT
[ENA]
¡û
>C08002333
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
133456
133531
+
Thr
CGT
[Ensembl]
¡û
>WENV183697822
OUNK010161083
[OUNK] metagenome; soil
119
194
+
Thr
CGT
[ENA]
¡û
>WENV170707227
LNAP01015584
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4444
4369
-
Thr
CGT
[ENA]
¡û
>W141779483
JONW01000006
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
196331
196406
+
Thr
CGT
[ENA]
¡û
>W141815968
JQJN01000013
Alphaproteobacteria
Caulobacter henricii [JQJN]
12273
12348
+
Thr
CGT
[ENA]
¡û
>W141816061
JQJP01000010
Alphaproteobacteria
Caulobacter henricii [JQJP]
10858
10933
+
Thr
CGT
[ENA]
¡û
>W2010369910
CAHJWH010000169
Alphaproteobacteria
Caulobacter sp. S45 [CAHJWH]
2
77
+
Thr
CGT
[ENA]
¡û
>W2010722900
JACICF010000001
Alphaproteobacteria
Sphingomicrobium lutaoense DSM 24194 [JACICF]
1597971
1598046
+
Thr
CGT
[ENA]
¡û
>W2010724550
JACIDK010000002
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
38338
38413
+
Thr
CGT
[ENA]
¡û
>W2011626172
SLZL01000037
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
8301
8226
-
Thr
CGT
[ENA]
¡û
>W2012047490
VIVU01000006
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
288390
288315
-
Thr
CGT
[ENA]
¡û
>W2012048373
VIWK01000008
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
288061
287986
-
Thr
CGT
[ENA]
¡û
>C231561314
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
239215
239290
+
Thr
CGT
-
¡û
>C231562957
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
376798
376873
+
Thr
CGT
-
¡û
>C231566405
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
170358
170283
-
Thr
CGT
-
¡û
>C241131693
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
143090
143165
+
Thr
CGT
-
¡û
>W2310010479
BMLD01000003
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
182475
182550
+
Thr
CGT
[ENA]
¡û
>W1510639846
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
826143
826068
-
Thr
CGT
[ENA]
¡û
>W121086758
AKKF01000130
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
18389
18464
+
Thr
CGT
[ENA]
¡û
>W1610724263
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
239602
239677
+
Thr
CGT
[ENA]
¡û
>W1610724528
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1381143
1381068
-
Thr
CGT
[ENA]
¡û
>W1610725789
LMFD01000001
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
25233
25158
-
Thr
CGT
[ENA]
¡û
>W1610726472
LMFQ01000008
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
70472
70547
+
Thr
CGT
[ENA]
¡û
>W1610726837
LMFX01000029
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
32626
32551
-
Thr
CGT
[ENA]
¡û
>W1610728297
LMHC01000001
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
260902
260977
+
Thr
CGT
[ENA]
¡û
>W1610728368
LMHD01000022
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
287702
287627
-
Thr
CGT
[ENA]
¡û
>W1610729138
LMHT01000031
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
86103
86028
-
Thr
CGT
[ENA]
¡û
>W1610730047
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1304697
1304622
-
Thr
CGT
[ENA]
¡û
>W1710565845
FORN01000024
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
33238
33163
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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