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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523841 (54 seq.)
>W1710861918
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
247740
247815
+
Ala
CGC
[ENA]
¡û
>W1710862183
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1373005
1372930
-
Ala
CGC
[ENA]
¡û
>W1710867702
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1296565
1296490
-
Ala
CGC
[ENA]
¡û
>W1711074216
LSJI01000026
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
804
879
+
Ala
CGC
[ENA]
¡û
>W1711075170
LSKE01000090
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
13396
13321
-
Ala
CGC
[ENA]
¡û
>W1711386104
MEEX01000011
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
103821
103746
-
Ala
CGC
[ENA]
¡û
>WENV180016282
FSUP01000147
[FSUP] metagenome; soil
1590
1665
+
Ala
CGC
[ENA]
¡û
>WENV180017095
FSWM01000295
[FSWM] metagenome; soil
10151
10076
-
Ala
CGC
[ENA]
¡û
>WENV180017706
FSXN01000956
[FSXN] metagenome; soil
2713
2638
-
Ala
CGC
[ENA]
¡û
>WENV180017713
FSXN01001069
[FSXN] metagenome; soil
1422
1497
+
Ala
CGC
[ENA]
¡û
>WENV180017718
FSXN01001183
[FSXN] metagenome; soil
707
632
-
Ala
CGC
[ENA]
¡û
>WENV180017908
FSXV01000045
[FSXV] metagenome; soil
21153
21228
+
Ala
CGC
[ENA]
¡û
>WENV180018718
FTAI01000050
[FTAI] metagenome; soil
1491
1566
+
Ala
CGC
[ENA]
¡û
>WENV180018743
FTAI01000668
[FTAI] metagenome; soil
1244
1319
+
Ala
CGC
[ENA]
¡û
>WENV180022249
FTFU01002375
[FTFU] metagenome; soil
1747
1672
-
Ala
CGC
[ENA]
¡û
>WENV180023980
FTIF01005401
[FTIF] metagenome; soil
1366
1441
+
Ala
CGC
[ENA]
¡û
>WENV180025973
FTIR01001108
[FTIR] metagenome; soil
2281
2206
-
Ala
CGC
[ENA]
¡û
>WENV180026322
FTIT01001502
[FTIT] metagenome; soil
8528
8603
+
Ala
CGC
[ENA]
¡û
>WENV180026656
FTIU01011282
[FTIU] metagenome; soil
290
365
+
Ala
CGC
[ENA]
¡û
>WENV180026872
FTIU01597232
[FTIU] metagenome; soil
3703
3628
-
Ala
CGC
[ENA]
¡û
>WENV180029485
FTJK01002863
[FTJK] metagenome; soil
2512
2437
-
Ala
CGC
[ENA]
¡û
>WENV180029763
FTJL01004031
[FTJL] metagenome; soil
1450
1375
-
Ala
CGC
[ENA]
¡û
>WENV180029771
FTJL01004541
[FTJL] metagenome; soil
899
824
-
Ala
CGC
[ENA]
¡û
>WENV180030916
FTJN01461628
[FTJN] metagenome; soil
1
76
+
Ala
CGC
[ENA]
¡û
>WENV180031676
FTJQ01143658
[FTJQ] metagenome; soil
213
288
+
Ala
CGC
[ENA]
¡û
>WENV180032775
FTKD01000789
[FTKD] metagenome; soil
7085
7010
-
Ala
CGC
[ENA]
¡û
>WENV180694672
OCZS012555875
[OCZS] soil metagenome; soil
75
150
+
Ala
CGC
[ENA]
¡û
>C08007899
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
3840160
3840088
-
Ala
CGC
[Ensembl]
¡û
>WENV170707401
LNAP01019580
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2968
2893
-
Ala
CGC
[ENA]
¡û
>WENV170707541
LNAP01024602
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2973
2898
-
Ala
CGC
[ENA]
¡û
>C181097383
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
97758
97683
-
Ala
CGC
-
¡û
>W141807518
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
1536652
1536577
-
Ala
CGC
[ENA]
¡û
>W1910743227
MHXN01000014
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 [MHXN]
344464
344539
+
Ala
CGC
[ENA]
¡û
>W1910743282
MHXO01000298
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
7946
8021
+
Ala
CGC
[ENA]
¡û
>W1810594042
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
377392
377467
+
Ala
CGC
[ENA]
¡û
>W1810594101
QFYR01000001
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
837718
837643
-
Ala
CGC
[ENA]
¡û
>W1810594163
QFYS01000008
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
40625
40550
-
Ala
CGC
[ENA]
¡û
>W2010369913
CAHJWH010000265
Alphaproteobacteria
Caulobacter sp. S45 [CAHJWH]
2463
2388
-
Ala
CGC
[ENA]
¡û
>W2010724551
JACIDK010000002
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
46493
46568
+
Ala
CGC
[ENA]
¡û
>W2010741420
JACJMQ010000001
Alphaproteobacteria
Caulobacter sp. H1 [JACJMQ]
630653
630578
-
Ala
CGC
[ENA]
¡û
>W2010781507
LMUL01000010
Alphaproteobacteria
Caulobacter sp. S45 [LMUL]
378060
377985
-
Ala
CGC
[ENA]
¡û
>W2010876659
MHXN01000014
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 [MHXN]
344464
344539
+
Ala
CGC
[ENA]
¡û
>W2010876714
MHXO01000298
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
7946
8021
+
Ala
CGC
[ENA]
¡û
>W2110251281
JACSJI010000005
Alphaproteobacteria
Caulobacter sp. 17J80-11 [JACSJI]
17792
17867
+
Ala
CGC
[ENA]
¡û
>C211318255
CP073078
Alphaproteobacteria
Caulobacter sp. S6 [CP073078]
4812914
4812839
-
Ala
CGC
-
¡û
>C231434454
CP101283
Alphaproteobacteria
Phenylobacterium sp. LH3H17 [CP101283]
4141853
4141778
-
Ala
CGC
-
¡û
>C231561315
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
247474
247549
+
Ala
CGC
-
¡û
>C231566406
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
167730
167655
-
Ala
CGC
-
¡û
>W1510639847
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
823952
823877
-
Ala
CGC
[ENA]
¡û
>W1610724264
LMDZ01000006
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
247740
247815
+
Ala
CGC
[ENA]
¡û
>W1610724529
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1373005
1372930
-
Ala
CGC
[ENA]
¡û
>W1610730048
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1296565
1296490
-
Ala
CGC
[ENA]
¡û
>W1610913521
LSJI01000026
Alphaproteobacteria
Phenylobacterium sp. CCH9-H3 [LSJI]
804
879
+
Ala
CGC
[ENA]
¡û
>W1610914475
LSKE01000090
Alphaproteobacteria
Phenylobacterium sp. CCH12-B4 [LSKE]
13396
13321
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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