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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52396 (63 seq.)
>W1710876961
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
1713791
1713704
-
Ser
TGA
[ENA]
¡û
>W131169832
ARFA01000036
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
2338
2251
-
Ser
TGA
[ENA]
¡û
>W1711503993
MKUD01000025
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
29488
29575
+
Ser
TGA
[ENA]
¡û
>W1711769439
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
104955
105040
+
Ser
TGA
[ENA]
¡û
>C171030756
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1271841
1271754
-
Ser
TGA
-
¡û
>C171037553
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
4721554
4721467
-
Ser
TGA
-
¡û
>C171104387
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4093930
4094017
+
Ser
TGA
-
¡û
>C171104441
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4074395
4074482
+
Ser
TGA
-
¡û
>W131180732
ARNI01000014
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
38701
38616
-
Ser
TGA
[ENA]
¡û
>W131181650
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
912590
912675
+
Ser
TGA
[ENA]
¡û
>W131221758
AUAS01000004
Bacteroidota
Dyadobacter alkalitolerans DSM 23607 [AUAS]
448
363
-
Ser
TGA
[ENA]
¡û
>W131231143
AUIF01000020
Bacteroidota
Runella zeae DSM 19591 [AUIF]
157991
158076
+
Ser
TGA
[ENA]
¡û
>W141168922
AXVJ01000021
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
28170
28255
+
Ser
TGA
[ENA]
¡û
>W141212145
AZQN01000002
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
582414
582327
-
Ser
TGA
[ENA]
¡û
>WENV170993783
MWWC01005422
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
731
818
+
Ser
TGA
[ENA]
¡û
>C191073380
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
2147228
2147313
+
Ser
TGA
-
¡û
>C191073381
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
2148342
2148427
+
Ser
TGA
-
¡û
>W09108963
ABTS01000013
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
142066
141981
-
Ser
TGA
[ENA]
¡û
>W141731381
JNJB01000001
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
508
423
-
Ser
TGA
[ENA]
¡û
>C09103939
CP001619
Bacteroidota
Dyadobacter fermentans DSM 18053 [CP001619]
6288790
6288875
+
Ser
TGA
[Ensembl]
¡û
>W1911701512
QNUL01000002
Bacteroidota
Dyadobacter sp. RS19 [QNUL]
43905
43820
-
Ser
TGA
[ENA]
¡û
>W1810392831
PYAS01000008
Bacteroidota
Dyadobacter jiangsuensis DSM 29057 [PYAS]
315291
315376
+
Ser
TGA
[ENA]
¡û
>W1810400078
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
2361495
2361410
-
Ser
TGA
[ENA]
¡û
>W1810595296
QGDT01000008
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
17348
17263
-
Ser
TGA
[ENA]
¡û
>W2010104541
BJYS01000033
Bacteroidota
Adhaeribacter aerolatus NBRC 106133 [BJYS]
27951
28036
+
Ser
TGA
[ENA]
¡û
>W2010435338
JAAAKZ010000004
Bacteroidota
Runella sp. CRIBMP [JAAAKZ]
288737
288822
+
Ser
TGA
[ENA]
¡û
>W2010459335
JAAFZH010000002
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
532435
532520
+
Ser
TGA
[ENA]
¡û
>W2010722559
JACIBY010000003
Bacteroidota
Runella defluvii DSM 17976 [JACIBY]
519434
519349
-
Ser
TGA
[ENA]
¡û
>W2010722560
JACIBY010000003
Bacteroidota
Runella defluvii DSM 17976 [JACIBY]
517713
517628
-
Ser
TGA
[ENA]
¡û
>W2011278052
QNUL01000002
Bacteroidota
Dyadobacter sp. RS19 [QNUL]
43905
43820
-
Ser
TGA
[ENA]
¡û
>W2011532755
SBLB01000003
Bacteroidota
Spirosoma sp. TY50 [SBLB]
537719
537804
+
Ser
TGA
[ENA]
¡û
>W2011633216
SMFL01000003
Bacteroidota
Dyadobacter sp. AR-3-6 [SMFL]
293658
293573
-
Ser
TGA
[ENA]
¡û
>W2011703707
SWFP01000003
Bacteroidota
Dyadobacter sp. QTA69 [SWFP]
883300
883385
+
Ser
TGA
[ENA]
¡û
>W2011705632
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
2222982
2222897
-
Ser
TGA
[ENA]
¡û
>W2011964910
VBSN01000049
Bacteroidota
Dyadobacter sp. NS28 [VBSN]
561353
561268
-
Ser
TGA
[ENA]
¡û
>W2011972259
VCEI01000025
Bacteroidota
Dyadobacter sediminis Z12 [VCEI]
496829
496914
+
Ser
TGA
[ENA]
¡û
>W2011972295
VCEJ01000004
Bacteroidota
Dyadobacter luticola T17 [VCEJ]
1875128
1875043
-
Ser
TGA
[ENA]
¡û
>W2012093258
VMRJ01000001
Bacteroidota
Hymenobacter sp. Fur1 [VMRJ]
1311621
1311536
-
Ser
TGA
[ENA]
¡û
>W2012131942
VSRN01000001
Bacteroidota
Dyadobacter sp. UC 10 [VSRN]
932693
932608
-
Ser
TGA
[ENA]
¡û
>W2012198191
VWSF01000006
Bacteroidota
Adhaeribacter sp. DK36 [VWSF]
152352
152437
+
Ser
TGA
[ENA]
¡û
>W2012222100
WAEL01000004
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
187043
187128
+
Ser
TGA
[ENA]
¡û
>W2012311217
WELI01000009
Bacteroidota
Rudanella sp. HX-22-17 [WELI]
181040
181125
+
Ser
TGA
[ENA]
¡û
>W2110023642
BMGE01000003
Bacteroidota
Dyadobacter sediminis CGMCC 1.12895 [BMGE]
729316
729231
-
Ser
TGA
[ENA]
¡û
>W2110025983
BMIA01000002
Bacteroidota
Dyadobacter endophyticus CGMCC 1.15288 [BMIA]
627428
627343
-
Ser
TGA
[ENA]
¡û
>W2110030164
BMLI01000001
Bacteroidota
Dyadobacter beijingensis CGMCC 1.6375 [BMLI]
1597029
1596944
-
Ser
TGA
[ENA]
¡û
>W2110121101
CAJRAF010000001
Bacteroidota
Dyadobacter sp. CECT 9275 [CAJRAF]
1048717
1048802
+
Ser
TGA
[ENA]
¡û
>W2110282968
JACWZY010000067
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
803
718
-
Ser
TGA
[ENA]
¡û
>W2110517323
JAFMYU010000003
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
213182
213097
-
Ser
TGA
[ENA]
¡û
>W2110517384
JAFMYV010000016
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
119763
119851
+
Ser
TGA
[ENA]
¡û
>W2110517394
JAFMYW010000001
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
59336
59251
-
Ser
TGA
[ENA]
¡û
>W2110659403
JAHXBN010000017
Bacteroidota
Dyadobacter fermentans JDP9 [JAHXBN]
18775
18690
-
Ser
TGA
[ENA]
¡û
>C211112058
CP056775
Bacteroidota
Dyadobacter sp. Q3-56 [CP056775]
2990697
2990612
-
Ser
TGA
-
¡û
>C231263214
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
4436225
4436140
-
Ser
TGA
-
¡û
>C231355060
CP094997
Bacteroidota
Dyadobacter sp. LJ419 [CP094997]
3524348
3524433
+
Ser
TGA
-
¡û
>C231407200
CP098806
Bacteroidota
Dyadobacter sp. CY399 [CP098806]
2988853
2988768
-
Ser
TGA
-
¡û
>W2110772324
VFIC01000010
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
1432
1347
-
Ser
TGA
[ENA]
¡û
>C241140698
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
2634662
2634577
-
Ser
TGA
-
¡û
>W2130044436
VFIA01000051
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
29107
29192
+
Ser
TGA
[ENA]
¡û
>C11112301
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
1038153
1038068
-
Ser
TGA
[Ensembl]
¡û
>W1610739307
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
1713791
1713704
-
Ser
TGA
[ENA]
¡û
>W1710513941
FNAN01000012
Bacteroidota
Dyadobacter soli [FNAN]
317802
317887
+
Ser
TGA
[ENA]
¡û
>W1710541588
FNYL01000001
Bacteroidota
Dyadobacter sp. SG02 [FNYL]
213950
214035
+
Ser
TGA
[ENA]
¡û
>W1710603386
FUZA01000001
Bacteroidota
Dyadobacter psychrophilus [FUZA]
812900
812815
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK