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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.524295 (21 seq.)
>W1711603459
MOLY01000042
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
59075
59150
+
Ala
GGC
[ENA]
¡û
>WENV180020324
FTCZ01001551
[FTCZ] metagenome; soil
684
759
+
Ala
GGC
[ENA]
¡û
>WENV180026327
FTIT01001650
[FTIT] metagenome; soil
1810
1885
+
Ala
GGC
[ENA]
¡û
>WENV180027882
FTIZ01205859
[FTIZ] metagenome; soil
78
153
+
Ala
GGC
[ENA]
¡û
>WENV180031917
FTJU01001305
[FTJU] metagenome; soil
7922
7997
+
Ala
GGC
[ENA]
¡û
>SRA1003397
SRR002326.435938
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
172
247
+
Ala
GGC
[SRA]
>W1810858368
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
4599
4674
+
Ala
GGC
[ENA]
¡û
>W2010370450
CAHJWW010000124
Alphaproteobacteria
Sphingomonas bacterium [CAHJWW]
5807
5882
+
Ala
GGC
[ENA]
¡û
>W2010370611
CAHJXD010000099
Alphaproteobacteria
Sphingomonas bacterium [CAHJXD]
76
1
-
Ala
GGC
[ENA]
¡û
>W2010370621
CAHJXD010000227
Alphaproteobacteria
Sphingomonas bacterium [CAHJXD]
9977
9902
-
Ala
GGC
[ENA]
¡û
>W2010534551
JAAOZC010000001
Alphaproteobacteria
Sphingomonas vulcanisoli CECT 8804 [JAAOZC]
528215
528290
+
Ala
GGC
[ENA]
¡û
>W2010567443
JAATJC010000001
Alphaproteobacteria
Sphingomonas kaistensis DSM 16846 [JAATJC]
1283178
1283103
-
Ala
GGC
[ENA]
¡û
>W2010732179
JACIJR010000003
Alphaproteobacteria
Sphingomonas prati DSM 103336 [JACIJR]
459188
459263
+
Ala
GGC
[ENA]
¡û
>W2012097936
VNIM01000039
Alphaproteobacteria
Sphingomonas sp. R4DWN [VNIM]
585
660
+
Ala
GGC
[ENA]
¡û
>W2012425950
WRPJ01000001
Alphaproteobacteria
Sphingomonas prati W18RD [WRPJ]
98975
99050
+
Ala
GGC
[ENA]
¡û
>W2110027972
BMJP01000002
Alphaproteobacteria
Sphingomonas prati CGMCC 1.15645 [BMJP]
100614
100539
-
Ala
GGC
[ENA]
¡û
>C201182043
CP046535
Alphaproteobacteria
Sphingomonas sp. LMO-1 [CP046535]
558212
558287
+
Ala
GGC
-
¡û
>C201261382
CP053346
Alphaproteobacteria
Sphingomonas sp. AP4-R1 [CP053346]
3391536
3391611
+
Ala
GGC
-
¡û
>C231381043
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
2714842
2714767
-
Ala
GGC
-
¡û
>C231565292
CP115174
Alphaproteobacteria
Sphingomonas sp. PAMB00755 [CP115174]
3631466
3631391
-
Ala
GGC
-
¡û
>C231595863
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
1304718
1304793
+
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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