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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525560 (41 seq.)
>C181081146
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4533125
4533050
-
Gly
GCC
-
¡û
>C181081147
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4532957
4532882
-
Gly
GCC
-
¡û
>C181081148
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4532811
4532736
-
Gly
GCC
-
¡û
>C181081149
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4532679
4532604
-
Gly
GCC
-
¡û
>C191125984
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245984
245909
-
Gly
GCC
-
¡û
>C191125985
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245849
245774
-
Gly
GCC
-
¡û
>C191125986
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245714
245639
-
Gly
GCC
-
¡û
>C191125987
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245579
245504
-
Gly
GCC
-
¡û
>W1911572371
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4285399
4285474
+
Gly
GCC
[ENA]
¡û
>W1911572373
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4292222
4292297
+
Gly
GCC
[ENA]
¡û
>W1911572374
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4292456
4292531
+
Gly
GCC
[ENA]
¡û
>W1810068723
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
339585
339660
+
Gly
GCC
[ENA]
¡û
>W1810068724
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
339745
339820
+
Gly
GCC
[ENA]
¡û
>W1810068725
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
339885
339960
+
Gly
GCC
[ENA]
¡û
>W1810068726
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
340007
340082
+
Gly
GCC
[ENA]
¡û
>W1810068727
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
340130
340205
+
Gly
GCC
[ENA]
¡û
>W1810068728
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
340251
340326
+
Gly
GCC
[ENA]
¡û
>W1810068738
PDZP01000009
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
203201
203126
-
Gly
GCC
[ENA]
¡û
>W1810069724
PEBS01000002
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
71290
71215
-
Gly
GCC
[ENA]
¡û
>W1810069725
PEBS01000002
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
71121
71046
-
Gly
GCC
[ENA]
¡û
>W1810069726
PEBS01000002
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
70975
70900
-
Gly
GCC
[ENA]
¡û
>W1810069727
PEBS01000002
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
70843
70768
-
Gly
GCC
[ENA]
¡û
>W1810072785
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
4685306
4685381
+
Gly
GCC
[ENA]
¡û
>SRA1004015
SRR002328.97191
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
21
96
+
Gly
GCC
[SRA]
>SRA1004110
SRR002328.152659
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
34
109
+
Gly
GCC
[SRA]
>W1810326763
PUGF01000012
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
90824
90899
+
Gly
GCC
[ENA]
¡û
>W1810326764
PUGF01000012
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
91018
91093
+
Gly
GCC
[ENA]
¡û
>W1810326765
PUGF01000012
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
91165
91240
+
Gly
GCC
[ENA]
¡û
>W1810576804
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
4442085
4442010
-
Gly
GCC
[ENA]
¡û
>SRA1014327
SRR023845.89792
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
47
122
+
Gly
GCC
[SRA]
>SRA1016393
SRR023846.478524
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
251
176
-
Gly
GCC
[SRA]
>SRA1016394
SRR023846.478524
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
63
-
Gly
GCC
[SRA]
>C151062587
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1883261
1883336
+
Gly
GCC
[Ensembl]
¡û
>C151062589
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1883537
1883612
+
Gly
GCC
[Ensembl]
¡û
>C161053678
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1734873
1734948
+
Gly
GCC
[Ensembl]
¡û
>C161053680
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1735148
1735223
+
Gly
GCC
[Ensembl]
¡û
>C161053776
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
1832850
1832925
+
Gly
GCC
[Ensembl]
¡û
>C161053778
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
1833124
1833199
+
Gly
GCC
[Ensembl]
¡û
>W1710568776
FOTW01000005
Betaproteobacteria
Rugamonas rubra [FOTW]
390795
390720
-
Gly
GCC
[ENA]
¡û
>W1710568777
FOTW01000005
Betaproteobacteria
Rugamonas rubra [FOTW]
390672
390597
-
Gly
GCC
[ENA]
¡û
>W1710568800
FOTW01000009
Betaproteobacteria
Rugamonas rubra [FOTW]
170070
169995
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK