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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525700 (64 seq.)
>W1711317451
MAXH01000069
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
20757
20682
-
Phe
GAA
[ENA]
¡û
>W1711317567
MAXK01000106
Thermodesulfobacteriota
Desulfobulbaceae bacterium S5133MH15 [MAXK]
2791
2866
+
Phe
GAA
[ENA]
¡û
>W1711317719
MAXQ01000210
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
9450
9375
-
Phe
GAA
[ENA]
¡û
>W1711662181
MQUF01000003
Thermodesulfobacteriota
Desulfobulbaceae bacterium DB1 [MQUF]
345516
345591
+
Phe
GAA
[ENA]
¡û
>C007906
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2024869
2024794
-
Phe
GAA
[Ensembl]
¡û
>C007907
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2009564
2009489
-
Phe
GAA
[Ensembl]
¡û
>WENV180042202
LNFX01004374
[LNFX] marine sediment metagenome; antarctic beach sand mud
246
171
-
Phe
GAA
[ENA]
¡û
>WENV180287491
OBIK01082907
[OBIK] hydrothermal vent metagenome; sea water
17
92
+
Phe
GAA
[ENA]
¡û
>WENV180386678
OBPC01054065
[OBPC] marine metagenome; Sterile flask
201
126
-
Phe
GAA
[ENA]
¡û
>WENV183704448
PDWI01000248
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
43828
43753
-
Phe
GAA
[ENA]
¡û
>WENV183704457
PDWI01000267
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5386
5311
-
Phe
GAA
[ENA]
¡û
>WENV183704871
PDWI01000712
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12864
12789
-
Phe
GAA
[ENA]
¡û
>WENV183707478
PDWI01008629
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10212
10287
+
Phe
GAA
[ENA]
¡û
>WENV183708156
PDWI01013432
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1551
1476
-
Phe
GAA
[ENA]
¡û
>WENV183709339
PDWI01027095
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5319
5244
-
Phe
GAA
[ENA]
¡û
>WENV183710328
PDWI01044321
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3583
3658
+
Phe
GAA
[ENA]
¡û
>WENV183710477
PDWI01047418
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22
97
+
Phe
GAA
[ENA]
¡û
>WENV183711306
PDWI01065913
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3253
3328
+
Phe
GAA
[ENA]
¡û
>WENV183711612
PDWI01074663
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1686
1761
+
Phe
GAA
[ENA]
¡û
>WENV183711697
PDWI01077150
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3410
3335
-
Phe
GAA
[ENA]
¡û
>WENV183711751
PDWI01078985
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
831
906
+
Phe
GAA
[ENA]
¡û
>WENV183711833
PDWI01081771
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1311
1386
+
Phe
GAA
[ENA]
¡û
>WENV183712883
PDWI01117651
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2193
2266
+
Phe
GAA
[ENA]
¡û
>WENV183714060
PDWI01165864
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
18
93
+
Phe
GAA
[ENA]
¡û
>WENV183715890
PDWI01270946
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23
98
+
Phe
GAA
[ENA]
¡û
>WENV183716547
PDWJ01000044
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
44336
44411
+
Phe
GAA
[ENA]
¡û
>WENV183716646
PDWJ01000102
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
78930
78855
-
Phe
GAA
[ENA]
¡û
>WENV183719037
PDWJ01009062
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3372
3297
-
Phe
GAA
[ENA]
¡û
>WENV183719126
PDWJ01009971
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1309
1234
-
Phe
GAA
[ENA]
¡û
>WENV183719127
PDWJ01009971
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1091
1016
-
Phe
GAA
[ENA]
¡û
>WENV183719423
PDWJ01013969
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5319
5244
-
Phe
GAA
[ENA]
¡û
>WENV183719846
PDWJ01021603
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3930
3855
-
Phe
GAA
[ENA]
¡û
>WENV183720115
PDWJ01026812
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
81
6
-
Phe
GAA
[ENA]
¡û
>WENV183720638
PDWJ01040277
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2425
2500
+
Phe
GAA
[ENA]
¡û
>WENV183721403
PDWJ01067660
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
24
99
+
Phe
GAA
[ENA]
¡û
>WENV183721543
PDWJ01074587
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
699
624
-
Phe
GAA
[ENA]
¡û
>WENV183721911
PDWJ01094090
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1293
1218
-
Phe
GAA
[ENA]
¡û
>WENV183746891
PPCM01000034
[PPCM] marine sediment metagenome; marine sediment
256037
256112
+
Phe
GAA
[ENA]
¡û
>WENV170006635
AMWB02038588
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2158
2233
+
Phe
GAA
[ENA]
¡û
>WENV170007742
AMWB02154863
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
21353
21278
-
Phe
GAA
[ENA]
¡û
>WENV170602357
FUWD010230486
[FUWD] metagenome; unknown
352
277
-
Phe
GAA
[ENA]
¡û
>WENV170622217
FUWD013093260
[FUWD] metagenome; unknown
1033
1108
+
Phe
GAA
[ENA]
¡û
>WENV170630420
FUWD013308136
[FUWD] metagenome; unknown
1033
1108
+
Phe
GAA
[ENA]
¡û
>WENV170642866
JFJP01046275
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5
80
+
Phe
GAA
[ENA]
¡û
>WENV170647020
JQIA01008277
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
3727
3802
+
Phe
GAA
[ENA]
¡û
>WENV170696504
LGVF01022793
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
9450
9375
-
Phe
GAA
[ENA]
¡û
>WENV170894383
MDTD01064587
[MDTD] marine metagenome; seawater
1917
1992
+
Phe
GAA
[ENA]
¡û
>SRA1039340
SRR035090.472834
454 Sequencing (SRP001811)
318
393
+
Phe
GAA
[SRA]
>W2011702128
SWCL01000002
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
60595
60520
-
Phe
GAA
[ENA]
¡û
>W2011702129
SWCL01000002
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
56679
56604
-
Phe
GAA
[ENA]
¡û
>W2011702211
SWCM01000007
Thermodesulfobacteriota
Desulfopila sp. IMCC35006 [SWCM]
155612
155687
+
Phe
GAA
[ENA]
¡û
>W2011702275
SWCN01000042
Thermodesulfobacteriota
Desulforhopalus sp. IMCC35007 [SWCN]
13378
13453
+
Phe
GAA
[ENA]
¡û
>SRA1054227
SRR035099.86903
454 Sequencing (SRP001820)
114
189
+
Phe
GAA
[SRA]
>SRA1054240
SRR035099.90777
454 Sequencing (SRP001820)
376
301
-
Phe
GAA
[SRA]
>SRA1054509
SRR035099.150021
454 Sequencing (SRP001820)
173
248
+
Phe
GAA
[SRA]
>W2110494519
JAFFPZ010000014
Thermodesulfobacteriota
Desulforhopalus vacuolatus DSM 9700 [JAFFPZ]
61866
61941
+
Phe
GAA
[ENA]
¡û
>W2110494766
JAFFQE010000008
Thermodesulfobacteriota
Desulfopila inferna DSM 19738 [JAFFQE]
195936
195861
-
Phe
GAA
[ENA]
¡û
>W2110504198
JAFITO010000015
Thermodesulfobacteriota
Desulfotalea psychrophila [JAFITO]
15220
15145
-
Phe
GAA
[ENA]
¡û
>C211013554
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
2326803
2326728
-
Phe
GAA
-
¡û
>C241146441
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
4588032
4587957
-
Phe
GAA
-
¡û
>C241146442
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
4584116
4584041
-
Phe
GAA
-
¡û
>C131010912
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
218391
218316
-
Phe
GAA
[Ensembl]
¡û
>W1710525197
FNJI01000021
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
68525
68600
+
Phe
GAA
[ENA]
¡û
>W1710593702
FRFE01000028
Thermodesulfobacteriota
Desulfopila aestuarii DSM 18488 [FRFE]
48832
48907
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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