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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526384 (74 seq.)
>WENV180123420
OASW01001653
[OASW] human gut metagenome; faeces
1549
1477
-
Arg
CCG
[ENA]
¡û
>WENV180124812
OASY01000091
[OASY] human gut metagenome; faeces
3985
3913
-
Arg
CCG
[ENA]
¡û
>WENV180125785
OASZ01000084
[OASZ] human gut metagenome; faeces
48383
48311
-
Arg
CCG
[ENA]
¡û
>WENV180140758
OATU01000541
[OATU] human gut metagenome; faeces
20840
20768
-
Arg
CCG
[ENA]
¡û
>WENV180148422
OAUK01000115
[OAUK] human gut metagenome; faeces
23818
23746
-
Arg
CCG
[ENA]
¡û
>WENV180182381
OAWO01017733
[OAWO] human gut metagenome; faeces
464
536
+
Arg
CCG
[ENA]
¡û
>WENV180237871
OBCY01120761
[OBCY] human gut metagenome; human gut
119
193
+
Arg
CCG
[ENA]
¡û
>WENV180306269
OBJP01000216
[OBJP] human gut metagenome; human gut
21048
20976
-
Arg
CCG
[ENA]
¡û
>WENV180306355
OBJP01000424
[OBJP] human gut metagenome; human gut
9284
9210
-
Arg
CCG
[ENA]
¡û
>WENV180307298
OBJQ01000060
[OBJQ] human gut metagenome; human gut
84949
84877
-
Arg
CCG
[ENA]
¡û
>WENV180307519
OBJQ01000456
[OBJQ] human gut metagenome; human gut
21870
21944
+
Arg
CCG
[ENA]
¡û
>WENV180446650
OBXC01000463
[OBXC] human gut metagenome; faeces
21011
21085
+
Arg
CCG
[ENA]
¡û
>WENV180454117
OBXM01005988
[OBXM] human gut metagenome; faeces
2440
2368
-
Arg
CCG
[ENA]
¡û
>WENV180458109
OBXV01000852
[OBXV] human gut metagenome; faeces
7792
7718
-
Arg
CCG
[ENA]
¡û
>WENV180482204
OBZG01000160
[OBZG] human gut metagenome; faeces
36565
36637
+
Arg
CCG
[ENA]
¡û
>WENV181183549
OEJW01000914
[OEJW] human metagenome; G_DNA_Stool
1017
1091
+
Arg
CCG
[ENA]
¡û
>WENV181338078
OFMF01000495
[OFMF] human gut metagenome; human gut
9283
9209
-
Arg
CCG
[ENA]
¡û
>WENV181339058
OFMG01000026
[OFMG] human gut metagenome; human gut
84891
84819
-
Arg
CCG
[ENA]
¡û
>WENV181345161
OFMK01039200
[OFMK] human gut metagenome; human gut
459
531
+
Arg
CCG
[ENA]
¡û
>WENV181459221
OGEK01006371
[OGEK] metagenome; Human gut stool
1759
1833
+
Arg
CCG
[ENA]
¡û
>WENV181551524
OGIN01033961
[OGIN] metagenome; Human gut stool
256
184
-
Arg
CCG
[ENA]
¡û
>WENV181600073
OGLD01000083
[OGLD] metagenome; Human gut stool
19824
19752
-
Arg
CCG
[ENA]
¡û
>WENV181733619
OGQE01005750
[OGQE] human gut metagenome; faeces
4924
4852
-
Arg
CCG
[ENA]
¡û
>WENV181755777
OGQS01016883
[OGQS] human gut metagenome; faeces
457
385
-
Arg
CCG
[ENA]
¡û
>WENV181823686
OGUJ01004330
[OGUJ] metagenome; Human gut stool
2411
2339
-
Arg
CCG
[ENA]
¡û
>WENV181834327
OGUR01000094
[OGUR] metagenome; Human gut stool
45462
45534
+
Arg
CCG
[ENA]
¡û
>WENV181887146
OGXL01001429
[OGXL] human gut metagenome; faeces
7702
7630
-
Arg
CCG
[ENA]
¡û
>WENV181890096
OGXN01004730
[OGXN] human gut metagenome; faeces
293
365
+
Arg
CCG
[ENA]
¡û
>WENV181892799
OGXP01008355
[OGXP] human gut metagenome; faeces
2229
2155
-
Arg
CCG
[ENA]
¡û
>WENV181916909
OGYG01000868
[OGYG] human gut metagenome; faeces
9215
9141
-
Arg
CCG
[ENA]
¡û
>WENV181933665
OGYS01022101
[OGYS] human gut metagenome; faeces
690
618
-
Arg
CCG
[ENA]
¡û
>WENV181941930
OGYY01017450
[OGYY] human gut metagenome; faeces
783
857
+
Arg
CCG
[ENA]
¡û
>WENV182123900
OHJQ01000443
[OHJQ] human gut metagenome; feces
15405
15331
-
Arg
CCG
[ENA]
¡û
>WENV182227445
OHRG01000591
[OHRG] human gut metagenome; feces
9203
9129
-
Arg
CCG
[ENA]
¡û
>WENV182228286
OHRH01000511
[OHRH] human gut metagenome; feces
13450
13376
-
Arg
CCG
[ENA]
¡û
>WENV182481517
OIRB01009788
[OIRB] human gut metagenome; human gut
841
767
-
Arg
CCG
[ENA]
¡û
>WENV182487882
OIRX01009924
[OIRX] human gut metagenome; human gut
161
235
+
Arg
CCG
[ENA]
¡û
>WENV182889676
OKSF01001129
[OKSF] human gut metagenome; faeces
13005
12931
-
Arg
CCG
[ENA]
¡û
>WENV182907702
OKTF01000436
[OKTF] human gut metagenome; feces
15721
15795
+
Arg
CCG
[ENA]
¡û
>WENV183018425
OLEY01020772
[OLEY] human gut metagenome; human gut
310
236
-
Arg
CCG
[ENA]
¡û
>WENV183018935
OLFA01017066
[OLFA] human gut metagenome; human gut
179
105
-
Arg
CCG
[ENA]
¡û
>WENV183100716
OLNG01000286
[OLNG] human gut metagenome; faeces
26617
26543
-
Arg
CCG
[ENA]
¡û
>WENV183101533
OLNH01000244
[OLNH] human gut metagenome; faeces
29841
29913
+
Arg
CCG
[ENA]
¡û
>WENV183102745
OLNI01003274
[OLNI] human gut metagenome; faeces
1668
1742
+
Arg
CCG
[ENA]
¡û
>WENV183241614
OLRB01000206
[OLRB] human gut metagenome; faeces
28864
28938
+
Arg
CCG
[ENA]
¡û
>WENV183255563
OLRK01000532
[OLRK] human gut metagenome; faeces
21476
21404
-
Arg
CCG
[ENA]
¡û
>WENV183256789
OLRL01000342
[OLRL] human gut metagenome; faeces
22235
22309
+
Arg
CCG
[ENA]
¡û
>WENV183290435
OLSH01000275
[OLSH] human gut metagenome; faeces
23818
23746
-
Arg
CCG
[ENA]
¡û
>WENV183316694
OLVT01000226
[OLVT] human gut metagenome; faeces
22242
22170
-
Arg
CCG
[ENA]
¡û
>WENV183558993
OOBR01042646
[OOBR] human gut metagenome; human gut
5
79
+
Arg
CCG
[ENA]
¡û
>WENV183563739
OOBX01008597
[OOBX] human gut metagenome; human gut
38
110
+
Arg
CCG
[ENA]
¡û
>WENV183762890
PPYE01289241
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
497
569
+
Arg
CCG
[ENA]
¡û
>WENV183765048
PPYE01325321
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2721
2647
-
Arg
CCG
[ENA]
¡û
>WENV183777123
PPYF01102378
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2428
2502
+
Arg
CCG
[ENA]
¡û
>WENV183778309
PPYF01117639
[PPYF] human gut metagenome; stool from patient with Crohn's disease
890
964
+
Arg
CCG
[ENA]
¡û
>WENV183782012
PPYF01208694
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2428
2502
+
Arg
CCG
[ENA]
¡û
>WENV183783993
PPYF01243027
[PPYF] human gut metagenome; stool from patient with Crohn's disease
882
956
+
Arg
CCG
[ENA]
¡û
>WENV183792012
PPYF01445243
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1794
1866
+
Arg
CCG
[ENA]
¡û
>C181064459
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
2288755
2288681
-
Arg
CCG
-
¡û
>C181191248
CP030280
Bacillota
Blautia argi KCTC 15426 [CP030280]
847015
847087
+
Arg
CCG
-
¡û
>W09113642
ABYU02000012
Bacillota
Blautia hansenii DSM 20583 [ABYU]
22139
22213
+
Arg
CCG
[ENA]
¡û
>W1911742816
QVHE01000028
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
16173
16247
+
Arg
CCG
[ENA]
¡û
>W1911742849
QVHF01000015
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
48011
47937
-
Arg
CCG
[ENA]
¡û
>W1810906790
QVGF01000028
Bacillota
Lachnospiraceae bacterium AM25-22 [QVGF]
16173
16247
+
Arg
CCG
[ENA]
¡û
>W1810906925
QVGI01000014
Bacillota
Lachnospiraceae bacterium AM25-11LB [QVGI]
47919
47845
-
Arg
CCG
[ENA]
¡û
>W2010485653
JAAITA010000002
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
85079
85007
-
Arg
CCG
[ENA]
¡û
>W2011307488
QVHE01000028
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
16173
16247
+
Arg
CCG
[ENA]
¡û
>W2011307521
QVHF01000015
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
48011
47937
-
Arg
CCG
[ENA]
¡û
>W2110075567
CACRSY010000014
Bacillota
Blautia hansenii [CACRSY]
22278
22352
+
Arg
CCG
[ENA]
¡û
>C201308536
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
2289446
2289372
-
Arg
CCG
-
¡û
>W2110720884
JAJBOG010000002
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
85079
85007
-
Arg
CCG
[ENA]
¡û
>C211423271
LR994468
Bacillota
Blautia argi [LR994468]
2135351
2135279
-
Arg
CCG
-
¡û
>C231449411
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
2288397
2288323
-
Arg
CCG
-
¡û
>W11105910
ACTV01000027
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
22642
22716
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK