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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526452 (123 seq.)
>W1711581248
MNTW01000001
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
81950
81875
-
Asn
GTT
[ENA]
¡û
>C171129857
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
68229
68154
-
Asn
GTT
-
¡û
>C171129858
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
68080
68005
-
Asn
GTT
-
¡û
>WENV180205175
OBAH01008525
[OBAH] human gut metagenome; human gut
1727
1652
-
Asn
GTT
[ENA]
¡û
>WENV180208428
OBAI01184670
[OBAI] human gut metagenome; human gut
133
58
-
Asn
GTT
[ENA]
¡û
>WENV180243821
OBDJ01141247
[OBDJ] human gut metagenome; human gut
147
222
+
Asn
GTT
[ENA]
¡û
>WENV180323773
OBKR01070910
[OBKR] human gut metagenome; feces
368
293
-
Asn
GTT
[ENA]
¡û
>WENV180326824
OBKS01191606
[OBKS] human gut metagenome; human gut
181
106
-
Asn
GTT
[ENA]
¡û
>WENV180330656
OBKV01149641
[OBKV] human gut metagenome; human gut
106
181
+
Asn
GTT
[ENA]
¡û
>WENV180337897
OBLG01184801
[OBLG] human gut metagenome; human gut
109
184
+
Asn
GTT
[ENA]
¡û
>WENV180547928
OCIU01160025
[OCIU] human gut metagenome; human gut
162
87
-
Asn
GTT
[ENA]
¡û
>WENV180762305
ODHZ01098050
[ODHZ] human metagenome; G_DNA_Stool
239
314
+
Asn
GTT
[ENA]
¡û
>WENV181247226
OFFK01010276
[OFFK] mouse gut metagenome; faeces
2171
2246
+
Asn
GTT
[ENA]
¡û
>WENV181256796
OFFT01033293
[OFFT] mouse gut metagenome; faeces
137
212
+
Asn
GTT
[ENA]
¡û
>WENV181263926
OFFZ01038980
[OFFZ] mouse gut metagenome; faeces
147
222
+
Asn
GTT
[ENA]
¡û
>WENV181271447
OFGF01036924
[OFGF] mouse gut metagenome; faeces
877
802
-
Asn
GTT
[ENA]
¡û
>WENV181272698
OFGG01043603
[OFGG] mouse gut metagenome; faeces
848
773
-
Asn
GTT
[ENA]
¡û
>WENV181332697
OFMA01004776
[OFMA] human gut metagenome; human gut
4070
3995
-
Asn
GTT
[ENA]
¡û
>WENV181495054
OGGB01053059
[OGGB] metagenome; Human gut stool
288
363
+
Asn
GTT
[ENA]
¡û
>WENV181503920
OGGJ01014022
[OGGJ] metagenome; Human gut stool
648
723
+
Asn
GTT
[ENA]
¡û
>WENV181505466
OGGK01021225
[OGGK] metagenome; Human gut stool
736
661
-
Asn
GTT
[ENA]
¡û
>WENV181540159
OGIA01007051
[OGIA] metagenome; Human gut stool
1617
1542
-
Asn
GTT
[ENA]
¡û
>WENV181578314
OGJY01000930
[OGJY] metagenome; Human gut stool
20773
20698
-
Asn
GTT
[ENA]
¡û
>WENV181604380
OGLI01046461
[OGLI] metagenome; Human gut stool
130
55
-
Asn
GTT
[ENA]
¡û
>WENV181621805
OGMF01016291
[OGMF] metagenome; Human gut stool
1372
1447
+
Asn
GTT
[ENA]
¡û
>WENV181637436
OGNB01008703
[OGNB] metagenome; Human gut stool
2755
2830
+
Asn
GTT
[ENA]
¡û
>WENV181641980
OGNF01044595
[OGNF] metagenome; Human gut stool
699
774
+
Asn
GTT
[ENA]
¡û
>WENV181641981
OGNF01044595
[OGNF] metagenome; Human gut stool
848
923
+
Asn
GTT
[ENA]
¡û
>WENV181669364
OGOL01024335
[OGOL] human gut metagenome; faeces
1319
1394
+
Asn
GTT
[ENA]
¡û
>WENV181669365
OGOL01024335
[OGOL] human gut metagenome; faeces
1468
1543
+
Asn
GTT
[ENA]
¡û
>WENV181677512
OGOQ01003673
[OGOQ] human gut metagenome; faeces
7815
7740
-
Asn
GTT
[ENA]
¡û
>WENV181687685
OGOX01003796
[OGOX] human gut metagenome; faeces
2527
2452
-
Asn
GTT
[ENA]
¡û
>WENV181728119
OGQA01018161
[OGQA] human gut metagenome; faeces
1224
1299
+
Asn
GTT
[ENA]
¡û
>WENV181765936
OGQY01093081
[OGQY] human gut metagenome; faeces
168
243
+
Asn
GTT
[ENA]
¡û
>WENV181865365
OGWU01021991
[OGWU] human gut metagenome; faeces
129
204
+
Asn
GTT
[ENA]
¡û
>WENV181885311
OGXJ01011651
[OGXJ] human gut metagenome; faeces
2485
2410
-
Asn
GTT
[ENA]
¡û
>WENV181898400
OGXT01004621
[OGXT] human gut metagenome; faeces
128
203
+
Asn
GTT
[ENA]
¡û
>WENV181902659
OGXW01059456
[OGXW] human gut metagenome; faeces
165
90
-
Asn
GTT
[ENA]
¡û
>WENV181903488
OGXX01001386
[OGXX] human gut metagenome; faeces
15551
15476
-
Asn
GTT
[ENA]
¡û
>WENV181913468
OGYE01008779
[OGYE] human gut metagenome; faeces
2295
2370
+
Asn
GTT
[ENA]
¡û
>WENV181929720
OGYO01057244
[OGYO] human gut metagenome; faeces
352
427
+
Asn
GTT
[ENA]
¡û
>WENV181942890
OGYZ01001807
[OGYZ] human gut metagenome; faeces
13498
13423
-
Asn
GTT
[ENA]
¡û
>WENV181955312
OGZK01002445
[OGZK] human gut metagenome; faeces
2533
2608
+
Asn
GTT
[ENA]
¡û
>WENV181960756
OGZO01001078
[OGZO] human gut metagenome; faeces
14651
14576
-
Asn
GTT
[ENA]
¡û
>WENV181984765
OHAI01066543
[OHAI] human gut metagenome; faeces
429
354
-
Asn
GTT
[ENA]
¡û
>WENV181985657
OHAJ01006321
[OHAJ] human gut metagenome; faeces
5872
5797
-
Asn
GTT
[ENA]
¡û
>WENV181992067
OHAQ01014910
[OHAQ] human gut metagenome; faeces
204
129
-
Asn
GTT
[ENA]
¡û
>WENV182005805
OHBE01019622
[OHBE] human gut metagenome; faeces
1289
1364
+
Asn
GTT
[ENA]
¡û
>WENV182009823
OHBJ01054723
[OHBJ] human gut metagenome; faeces
624
549
-
Asn
GTT
[ENA]
¡û
>WENV182074406
OHFP01023844
[OHFP] human gut metagenome; feces
208
133
-
Asn
GTT
[ENA]
¡û
>WENV182148289
OHLE01045493
[OHLE] human gut metagenome; feces
186
261
+
Asn
GTT
[ENA]
¡û
>WENV182152059
OHLK01019606
[OHLK] human gut metagenome; feces
458
533
+
Asn
GTT
[ENA]
¡û
>WENV182241501
OHSF01041562
[OHSF] human gut metagenome; feces
115
40
-
Asn
GTT
[ENA]
¡û
>WENV182510433
OIWK01002082
[OIWK] human gut metagenome; faeces
13637
13562
-
Asn
GTT
[ENA]
¡û
>WENV182684040
OJNX01026382
[OJNX] human gut metagenome; human gut
565
490
-
Asn
GTT
[ENA]
¡û
>WENV182699533
OJON01051767
[OJON] human gut metagenome; human gut
39
114
+
Asn
GTT
[ENA]
¡û
>WENV182720049
OJPN01002427
[OJPN] human gut metagenome; stool sample
1341
1416
+
Asn
GTT
[ENA]
¡û
>WENV182725613
OJPT01007312
[OJPT] human gut metagenome; stool sample
1982
1907
-
Asn
GTT
[ENA]
¡û
>WENV182726599
OJPU01023374
[OJPU] human gut metagenome; stool sample
85
10
-
Asn
GTT
[ENA]
¡û
>WENV182727682
OJPW01000085
[OJPW] human gut metagenome; stool sample
37521
37446
-
Asn
GTT
[ENA]
¡û
>WENV182881186
OKSA01004926
[OKSA] human gut metagenome; faeces
7170
7095
-
Asn
GTT
[ENA]
¡û
>WENV182888855
OKSE01007526
[OKSE] human gut metagenome; faeces
2641
2716
+
Asn
GTT
[ENA]
¡û
>WENV182928160
OKUN01020429
[OKUN] human gut metagenome; feces
240
315
+
Asn
GTT
[ENA]
¡û
>WENV183027017
OLFU01013549
[OLFU] human gut metagenome; faeces
556
481
-
Asn
GTT
[ENA]
¡û
>WENV183028101
OLFV01001010
[OLFV] human gut metagenome; faeces
13663
13738
+
Asn
GTT
[ENA]
¡û
>WENV183035175
OLFZ01002082
[OLFZ] human gut metagenome; faeces
3118
3193
+
Asn
GTT
[ENA]
¡û
>WENV183281117
OLSB01034261
[OLSB] human gut metagenome; faeces
574
649
+
Asn
GTT
[ENA]
¡û
>WENV183324630
OLVY01030312
[OLVY] human gut metagenome; feces
1076
1151
+
Asn
GTT
[ENA]
¡û
>WENV183339185
OLWK01018599
[OLWK] human gut metagenome; feces
1454
1529
+
Asn
GTT
[ENA]
¡û
>WENV183340405
OLWL01010079
[OLWL] human gut metagenome; feces
2655
2730
+
Asn
GTT
[ENA]
¡û
>WENV183358090
OLXG01011245
[OLXG] human gut metagenome; feces
144
69
-
Asn
GTT
[ENA]
¡û
>WENV183360383
OLXI01017519
[OLXI] human gut metagenome; feces
150
75
-
Asn
GTT
[ENA]
¡û
>WENV183377476
OLYB01020912
[OLYB] human gut metagenome; feces
2200
2275
+
Asn
GTT
[ENA]
¡û
>WENV183462620
OMDW01054235
[OMDW] human gut metagenome; feces
73
148
+
Asn
GTT
[ENA]
¡û
>WENV183518461
OMNQ01006306
[OMNQ] human gut metagenome; feces
2784
2859
+
Asn
GTT
[ENA]
¡û
>WENV183532572
OOAD01002092
[OOAD] human gut metagenome; human gut
7042
6967
-
Asn
GTT
[ENA]
¡û
>WENV183540024
OOAJ01001581
[OOAJ] human gut metagenome; human gut
7682
7607
-
Asn
GTT
[ENA]
¡û
>WENV183560445
OOBT01056094
[OOBT] human gut metagenome; human gut
267
342
+
Asn
GTT
[ENA]
¡û
>WENV183574137
OOCH01003091
[OOCH] human gut metagenome; human gut
3079
3154
+
Asn
GTT
[ENA]
¡û
>WENV183575619
OOCI01004092
[OOCI] human gut metagenome; human gut
5662
5737
+
Asn
GTT
[ENA]
¡û
>WENV183597761
OODF01004261
[OODF] human gut metagenome; human gut
1733
1808
+
Asn
GTT
[ENA]
¡û
>WENV183601133
OODJ01000325
[OODJ] human gut metagenome; human gut
47079
47004
-
Asn
GTT
[ENA]
¡û
>WENV183604227
OODL01001847
[OODL] human gut metagenome; human gut
2584
2659
+
Asn
GTT
[ENA]
¡û
>WENV183639797
OQVI01070434
[OQVI] human gut metagenome; human gut
170
95
-
Asn
GTT
[ENA]
¡û
>WENV183786866
PPYF01308200
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2383
2458
+
Asn
GTT
[ENA]
¡û
>WENV183786867
PPYF01308200
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2532
2607
+
Asn
GTT
[ENA]
¡û
>WENV170057261
CDZG01031401
[CDZG] gut metagenome; human stools
214
139
-
Asn
GTT
[ENA]
¡û
>WENV170057962
CDZG01058506
[CDZG] gut metagenome; human stools
1
76
+
Asn
GTT
[ENA]
¡û
>WENV170059205
CDZH01037934
[CDZH] gut metagenome; human stools
10680
10605
-
Asn
GTT
[ENA]
¡û
>WENV170059206
CDZH01037934
[CDZH] gut metagenome; human stools
10531
10456
-
Asn
GTT
[ENA]
¡û
>WENV170061383
CDZI01046135
[CDZI] gut metagenome; human stools
119
194
+
Asn
GTT
[ENA]
¡û
>WENV170075386
CDZT01032293
[CDZT] gut metagenome; human stools
2399
2474
+
Asn
GTT
[ENA]
¡û
>WENV170075387
CDZT01032293
[CDZT] gut metagenome; human stools
2548
2623
+
Asn
GTT
[ENA]
¡û
>WENV170076427
CDZU01002958
[CDZU] gut metagenome; human stools
1678
1603
-
Asn
GTT
[ENA]
¡û
>WENV170077762
CDZU01040357
[CDZU] gut metagenome; human stools
214
139
-
Asn
GTT
[ENA]
¡û
>WENV170078557
CDZV01030576
[CDZV] gut metagenome; human stools
1069
1144
+
Asn
GTT
[ENA]
¡û
>WENV170078558
CDZV01030576
[CDZV] gut metagenome; human stools
1218
1293
+
Asn
GTT
[ENA]
¡û
>WENV170079044
CDZV01048343
[CDZV] gut metagenome; human stools
1
76
+
Asn
GTT
[ENA]
¡û
>WENV170079045
CDZV01048343
[CDZV] gut metagenome; human stools
150
225
+
Asn
GTT
[ENA]
¡û
>WENV170111131
CECF01061936
[CECF] gut metagenome; human stools
1
76
+
Asn
GTT
[ENA]
¡û
>WENV170636259
JFBN01107879
[JFBN] chicken gut metagenome; ceca of Broiler chicken
221
296
+
Asn
GTT
[ENA]
¡û
>C181081048
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2297728
2297803
+
Asn
GTT
-
¡û
>W09112343
ABXU01000019
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
8683
8608
-
Asn
GTT
[ENA]
¡û
>W09112344
ABXU01000019
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
8534
8459
-
Asn
GTT
[ENA]
¡û
>W09118199
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
437156
437231
+
Asn
GTT
[ENA]
¡û
>C09103863
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
925538
925463
-
Asn
GTT
[Ensembl]
¡û
>W2010264076
CABKOD020000045
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
11516
11441
-
Asn
GTT
[ENA]
¡û
>W2010264077
CABKOD020000045
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
11367
11292
-
Asn
GTT
[ENA]
¡û
>W2010492278
JAAKEH010000040
Thermodesulfobacteriota
Desulfovibrio sp. ZJ200 [JAAKEH]
26323
26398
+
Asn
GTT
[ENA]
¡û
>W2010492294
JAAKEI010000001
Thermodesulfobacteriota
Desulfovibrio sp. ZJ369 [JAAKEI]
79383
79458
+
Asn
GTT
[ENA]
¡û
>W2010492380
JAAKEJ010000005
Thermodesulfobacteriota
Desulfovibrio sp. ZJ209 [JAAKEJ]
150950
150875
-
Asn
GTT
[ENA]
¡û
>W2010492425
JAAKEK010000005
Thermodesulfobacteriota
Desulfovibrio sp. ZJ746 [JAAKEK]
150950
150875
-
Asn
GTT
[ENA]
¡û
>W2011483452
RQYH01000029
Thermodesulfobacteriota
Desulfovibrio sp. OH1186_COT-070 [RQYH]
874
799
-
Asn
GTT
[ENA]
¡û
>W2011483620
RQYK01000029
Thermodesulfobacteriota
Desulfovibrio sp. OH1209_COT-279 [RQYK]
874
799
-
Asn
GTT
[ENA]
¡û
>W2110127260
CAJTFO010000018
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CAJTFO]
1255
1180
-
Asn
GTT
[ENA]
¡û
>W2110225143
JACJLW010000040
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
17154
17079
-
Asn
GTT
[ENA]
¡û
>W2110225144
JACJLW010000040
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
17005
16930
-
Asn
GTT
[ENA]
¡û
>W2110225274
JACJLY010000037
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
5708
5783
+
Asn
GTT
[ENA]
¡û
>W2110225275
JACJLY010000037
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
5857
5932
+
Asn
GTT
[ENA]
¡û
>C211424237
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
372155
372230
+
Asn
GTT
-
¡û
>C241390239
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2875321
2875396
+
Asn
GTT
-
¡û
>C241390240
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2875470
2875545
+
Asn
GTT
-
¡û
>W1710579847
FPIW01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
20790
20715
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK