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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526857 (32 seq.)
>W1710810695
LKHP01000015
Bacillota
Caloramator mitchellensis [LKHP]
35548
35473
-
Lys
CTT
[ENA]
¡û
>W131251474
CAVN010000055
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
1572
1647
+
Lys
CTT
[ENA]
¡û
>W131251511
CAVN010000099
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
131097
131022
-
Lys
CTT
[ENA]
¡û
>W131251517
CAVN010000099
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
130567
130492
-
Lys
CTT
[ENA]
¡û
>W131251560
CAVN010000158
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
2392
2317
-
Lys
CTT
[ENA]
¡û
>W131251564
CAVN010000160
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
2637
2562
-
Lys
CTT
[ENA]
¡û
>WENV181226036
OFDK01000002
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
102731
102806
+
Lys
CTT
[ENA]
¡û
>WENV181226038
OFDK01000002
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
102916
102991
+
Lys
CTT
[ENA]
¡û
>W141149963
AXAA01000003
Bacillota
Caloramator sp. ALD01 [AXAA]
20
95
+
Lys
CTT
[ENA]
¡û
>W141149970
AXAA01000003
Bacillota
Caloramator sp. ALD01 [AXAA]
631
706
+
Lys
CTT
[ENA]
¡û
>W141244593
CAKP01000096
Bacillota
Caloramator australicus RC3 [CAKP]
56395
56470
+
Lys
CTT
[ENA]
¡û
>W141244595
CAKP01000096
Bacillota
Caloramator australicus RC3 [CAKP]
56588
56663
+
Lys
CTT
[ENA]
¡û
>WENV170561395
CZCA01007998
[CZCA] anaerobic digester metagenome; anaerobic digester
1829
1754
-
Lys
CTT
[ENA]
¡û
>WENV170562934
CZCB01007521
[CZCB] anaerobic digester metagenome; anaerobic digester
7460
7535
+
Lys
CTT
[ENA]
¡û
>WENV170686071
LFRM01124547
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7408
7483
+
Lys
CTT
[ENA]
¡û
>WENV170723848
LSQX01283207
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
121536
121461
-
Lys
CTT
[ENA]
¡û
>C191174969
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
935921
935846
-
Lys
CTT
-
¡û
>C231599612
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
1112637
1112562
-
Lys
CTT
-
¡û
>C231599640
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
212526
212451
-
Lys
CTT
-
¡û
>C231599646
CP117677
Bacillota
Caloramator sp. mosi_1 [CP117677]
212000
211925
-
Lys
CTT
-
¡û
>C231611056
CP118396
Bacillota
Caloramator sp. Dgby_cultured_2 [CP118396]
2598499
2598574
+
Lys
CTT
-
¡û
>C231611078
CP118396
Bacillota
Caloramator sp. Dgby_cultured_2 [CP118396]
1695205
1695130
-
Lys
CTT
-
¡û
>C231611080
CP118396
Bacillota
Caloramator sp. Dgby_cultured_2 [CP118396]
1695012
1694937
-
Lys
CTT
-
¡û
>W2130000898
BMAP01000096
Bacillota
Thermobrachium celere A9 [BMAP]
38823
38748
-
Lys
CTT
[ENA]
¡û
>W1610605895
LFSJ01000064
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
7408
7483
+
Lys
CTT
[ENA]
¡û
>W1610674750
LKHP01000015
Bacillota
Caloramator mitchellensis [LKHP]
35548
35473
-
Lys
CTT
[ENA]
¡û
>W1710538265
FNUK01000013
Bacillota
Caloramator fervidus [FNUK]
22222
22297
+
Lys
CTT
[ENA]
¡û
>W1710538267
FNUK01000013
Bacillota
Caloramator fervidus [FNUK]
22407
22482
+
Lys
CTT
[ENA]
¡û
>W1710584029
FQVG01000021
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
38412
38337
-
Lys
CTT
[ENA]
¡û
>W1710584035
FQVG01000021
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
37885
37810
-
Lys
CTT
[ENA]
¡û
>W1710602551
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
18493
18568
+
Lys
CTT
[ENA]
¡û
>W1710727182
LFSJ01000064
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
7408
7483
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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