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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52727 (8 seq.)
>W131235333
AULM01000011
Thermodesulfobacteriota
Desulfatiglans anilini DSM 4660 [AULM]
21994
22081
+
Ser
TGA
[ENA]
¡û
>WENV183701741
PDVH01000771
[PDVH] alkali sediment metagenome; glacial lake sediment
7067
7154
+
Ser
TGA
[ENA]
¡û
>WENV183702146
PDVH01018746
[PDVH] alkali sediment metagenome; glacial lake sediment
689
776
+
Ser
TGA
[ENA]
¡û
>WENV170716085
LQYC01004088
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
1391
1305
-
Ser
TGA
[ENA]
¡û
>WENV170716141
LQYC01004644
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
38143
38229
+
Ser
TGA
[ENA]
¡û
>W1910726101
MGRA01000409
Deltaproteobacteria
Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12 [MGRA]
151
64
-
Ser
TGA
[ENA]
¡û
>W2010859529
MGRA01000409
Deltaproteobacteria
Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12 [MGRA]
151
64
-
Ser
TGA
[ENA]
¡û
>C231543781
CP113000
Thermodesulfobacteriota
Desulfobacterota bacterium [CP113000]
689306
689392
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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