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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527334 (31 seq.)
>W1710876159
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1221037
1221112
+
Glu
CTC
[ENA]
¡û
>W1710921170
LNZG01000017
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
4958
5033
+
Glu
CTC
[ENA]
¡û
>W131162249
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1782101
1782176
+
Glu
CTC
[ENA]
¡û
>W131184624
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
504418
504343
-
Glu
CTC
[ENA]
¡û
>W1711505272
MKVJ01000001
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
76371
76446
+
Glu
CTC
[ENA]
¡û
>C012817
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
980250
980325
+
Glu
CTC
[Ensembl]
¡û
>WENV180018941
FTBD01000076
[FTBD] metagenome; soil
1549
1624
+
Glu
CTC
[ENA]
¡û
>W141146508
AWVQ01000346
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
9579
9504
-
Glu
CTC
[ENA]
¡û
>W141188402
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
472008
472083
+
Glu
CTC
[ENA]
¡û
>W1810058092
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
2563288
2563215
-
Glu
CTC
[ENA]
¡û
>W1810684437
QKXI01000001
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
292798
292725
-
Glu
CTC
[ENA]
¡û
>W2010472247
JAAHFF010000001
Actinomycetota
Microbacterium sp. HY54 [JAAHFF]
734600
734673
+
Glu
CTC
[ENA]
¡û
>W2010472311
JAAHFG010000003
Actinomycetota
Microbacterium sp. HY82 [JAAHFG]
142457
142530
+
Glu
CTC
[ENA]
¡û
>W2010472346
JAAHFH010000002
Actinomycetota
Microbacterium sp. HY60 [JAAHFH]
762696
762769
+
Glu
CTC
[ENA]
¡û
>W2010472393
JAAHFI010000002
Actinomycetota
Microbacterium sp. HY89 [JAAHFI]
695532
695605
+
Glu
CTC
[ENA]
¡û
>W2010598889
JABFMV010000019
Actinomycetota
Leifsonia sp. C5G2 [JABFMV]
29398
29471
+
Glu
CTC
[ENA]
¡û
>W2010670911
JACCBJ010000001
Actinomycetota
Leifsonia soli DSM 23871 [JACCBJ]
702169
702244
+
Glu
CTC
[ENA]
¡û
>W2010676075
JACCHJ010000001
Actinomycetota
Leifsonia naganoensis DSM 15166 [JACCHJ]
4201837
4201762
-
Glu
CTC
[ENA]
¡û
>W2010714057
JACHVP010000001
Actinomycetota
Leifsonia aquatica DSM 20146 [JACHVP]
871824
871899
+
Glu
CTC
[ENA]
¡û
>W2011392653
RCCO01000001
Actinomycetota
Leifsonia sp. M321 24_2 [RCCO]
1151794
1151869
+
Glu
CTC
[ENA]
¡û
>W2011650140
SNYB01000001
Actinomycetota
Leifsonia sp. 115AMFTsu3.1 [SNYB]
1782226
1782301
+
Glu
CTC
[ENA]
¡û
>W2012023077
VFRB01000001
Actinomycetota
Microbacterium lindanitolerans DSM 22422 [VFRB]
248818
248745
-
Glu
CTC
[ENA]
¡û
>W2012093658
VMSF01000001
Actinomycetota
Leifsonia sp. AG29 [VMSF]
1273988
1274061
+
Glu
CTC
[ENA]
¡û
>W2110068881
BPER01000002
Actinomycetota
Leifsonia sp. LS1 [BPER]
387737
387662
-
Glu
CTC
[ENA]
¡û
>W2110522654
JAGEKP010000014
Actinomycetota
Leifsonia sp. TF02-11 [JAGEKP]
61979
62054
+
Glu
CTC
[ENA]
¡û
>C211143527
CP061169
Actinomycetota
Microbacterium sp. HY60 [CP061169]
1432239
1432312
+
Glu
CTC
-
¡û
>C211143572
CP061170
Actinomycetota
Microbacterium sp. HY82 [CP061170]
1464047
1464120
+
Glu
CTC
-
¡û
>C211199435
CP065037
Actinomycetota
Leifsonia sp. ZF2019 [CP065037]
1830742
1830817
+
Glu
CTC
-
¡û
>W1511691445
LFYU01001892
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
1104
1029
-
Glu
CTC
[ENA]
¡û
>C161076844
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
136007
136082
+
Glu
CTC
[Ensembl]
¡û
>W1610738505
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1221037
1221112
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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