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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527336 (52 seq.)
>W1711097991
LTJE01000032
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
117
42
-
Met
CAT
[ENA]
¡û
>W131181275
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
232898
232823
-
Met
CAT
[ENA]
¡û
>W1711487706
MKGI01000043
Bacteroidota
Cloacibacterium normanense [MKGI]
23727
23652
-
Met
CAT
[ENA]
¡û
>WENV180284076
OBID01014682
[OBID] metagenome; sludge
503
430
-
fMet
CAT
[ENA]
¡û
>WENV181168443
OEIU01366797
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
164
91
-
fMet
CAT
[ENA]
¡û
>W141266264
CCMH01000046
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
4083
4158
+
Met
CAT
[ENA]
¡û
>WENV183727660
PJTP01000066
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2063
2136
+
fMet
CAT
[ENA]
¡û
>WENV170010889
APMI01033496
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2996
3069
+
Met
CAT
[ENA]
¡û
>WENV170658163
JTFP01062588
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
665
590
-
Met
CAT
[ENA]
¡û
>C191120405
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
855099
855026
-
Met
CAT
-
¡û
>C191210737
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
2120889
2120962
+
Met
CAT
-
¡û
>W1810304708
PTPZ01000004
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
202266
202339
+
Met
CAT
[ENA]
¡û
>W2010102713
BJXC01000023
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [BJXC]
53628
53701
+
fMet
CAT
[ENA]
¡û
>W2010599622
JABFOQ010000015
Bacteroidota
Empedobacter stercoris ES202 [JABFOQ]
63978
64051
+
fMet
CAT
[ENA]
¡û
>W2010750640
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
204929
205002
+
fMet
CAT
[ENA]
¡û
>W2011423665
RHPN01000017
Bacteroidota
Empedobacter falsenii WF_350 [RHPN]
10454
10381
-
fMet
CAT
[ENA]
¡û
>W2011423723
RHPO01000017
Bacteroidota
Empedobacter falsenii WF_348 [RHPO]
10449
10376
-
fMet
CAT
[ENA]
¡û
>W2011679897
SRPE01000003
Bacteroidota
Empedobacter sp. MRS2 [SRPE]
211408
211481
+
fMet
CAT
[ENA]
¡û
>W2011821600
UFXS01000001
Bacteroidota
Empedobacter falsenii NCTC13456 [UFXS]
241385
241312
-
fMet
CAT
[ENA]
¡û
>W2011845978
UHIU01000004
Bacteroidota
Weeksella virosa NCTC11635 [UHIU]
950331
950258
-
fMet
CAT
[ENA]
¡û
>W2011955434
UYIY01000013
Bacteroidota
Empedobacter brevis NCTC13469 [UYIY]
505082
505155
+
fMet
CAT
[ENA]
¡û
>W2011955436
UYIY01000013
Bacteroidota
Empedobacter brevis NCTC13469 [UYIY]
507651
507724
+
fMet
CAT
[ENA]
¡û
>W2110022641
BMFL01000001
Bacteroidota
Chishuiella changwenlii CGMCC 1.12707 [BMFL]
6334
6261
-
fMet
CAT
[ENA]
¡û
>W2110030818
BMLV01000001
Bacteroidota
Cloacibacterium rupense CGMCC 1.7656 [BMLV]
113203
113130
-
fMet
CAT
[ENA]
¡û
>W2110140955
JAAGKM010000005
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
113962
114035
+
fMet
CAT
[ENA]
¡û
>W2110285657
JACXZB010000005
Bacteroidota
Empedobacter stercoris ES180 [JACXZB]
28950
28877
-
fMet
CAT
[ENA]
¡û
>W2110285715
JACXZC010000003
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
151016
151089
+
fMet
CAT
[ENA]
¡û
>W2110286624
JACXZR010000006
Bacteroidota
Empedobacter stercoris ES182 [JACXZR]
21275
21202
-
fMet
CAT
[ENA]
¡û
>W2110316111
JADGIK010000003
Bacteroidota
Faecalibacter sp. WQ 117 [JADGIK]
154485
154558
+
fMet
CAT
[ENA]
¡û
>W2110316113
JADGIK010000003
Bacteroidota
Faecalibacter sp. WQ 117 [JADGIK]
154802
154875
+
fMet
CAT
[ENA]
¡û
>W2110683360
JAIKTW010000023
Bacteroidota
Empedobacter falsenii B4b2P8686 [JAIKTW]
27443
27370
-
fMet
CAT
[ENA]
¡û
>C201090644
CP040908
Bacteroidota
Empedobacter falsenii 1681-1 [CP040908]
204929
205002
+
fMet
CAT
-
¡û
>C201136070
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
1239441
1239514
+
fMet
CAT
-
¡û
>C211094286
CP053698
Bacteroidota
Empedobacter stercoris ES183 [CP053698]
2227772
2227699
-
fMet
CAT
-
¡û
>C211314306
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
834027
833954
-
fMet
CAT
-
¡û
>C211314308
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
833699
833626
-
fMet
CAT
-
¡û
>C211424686
OU015319
Bacteroidota
Cloacibacterium caeni Isolate1 [OU015319]
1301944
1301871
-
fMet
CAT
-
¡û
>C211424814
OU015321
Bacteroidota
Cloacibacterium caeni Isolate2 [OU015321]
1160579
1160652
+
fMet
CAT
-
¡û
>C231486730
CP104209
Bacteroidota
Empedobacter stercoris SCVM0123 [CP104209]
2267379
2267452
+
fMet
CAT
-
¡û
>C231499023
CP104850
Bacteroidota
Cloacibacterium sp. TD35 [CP104850]
1768551
1768478
-
fMet
CAT
-
¡û
>C241016827
CP013210
Bacteroidota
Empedobacter brevis BCLYD2 [CP013210]
882529
882602
+
fMet
CAT
-
¡û
>C241359096
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
764368
764295
-
fMet
CAT
-
¡û
>C241359098
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
764110
764037
-
fMet
CAT
-
¡û
>W1511391186
JSYQ01000049
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
1009
934
-
Met
CAT
[ENA]
¡û
>C11123819
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
987507
987432
-
Met
CAT
[Ensembl]
¡û
>W1610503143
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349261
349336
+
Met
CAT
[ENA]
¡û
>W1710496377
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
349261
349336
+
Met
CAT
[ENA]
¡û
>W1710524986
FNJE01000001
Bacteroidota
Cloacibacterium normanense [FNJE]
23986
23911
-
Met
CAT
[ENA]
¡û
>W1710570195
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
64179
64254
+
Met
CAT
[ENA]
¡û
>W1710570197
FOUZ01000003
Bacteroidota
Algoriella xinjiangensis [FOUZ]
66748
66823
+
Met
CAT
[ENA]
¡û
>W1710590796
FRBH01000007
Bacteroidota
Chishuiella changwenlii [FRBH]
298892
298967
+
Met
CAT
[ENA]
¡û
>W1710606309
FWXS01000001
Bacteroidota
Moheibacter sediminis [FWXS]
598225
598150
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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