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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527411 (78 seq.)
>W1710874053
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
298066
298141
+
Thr
CGT
[ENA]
¡û
>W1710874697
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1179137
1179064
-
Thr
CGT
[ENA]
¡û
>W1710874846
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
295022
295097
+
Thr
CGT
[ENA]
¡û
>W1710878742
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
15026
15101
+
Thr
CGT
[ENA]
¡û
>W1712084118
NHQT01000002
Actinomycetota
Nocardioides sp. XL1 [NHQT]
83738
83813
+
Thr
CGT
[ENA]
¡û
>W131226752
AUEP01000015
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
83794
83869
+
Thr
CGT
[ENA]
¡û
>C015184
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
425150
425225
+
Thr
CGT
[Ensembl]
¡û
>WENV180000054
CZKA01000078
[CZKA] metagenome; liquid mineral medium
12616
12541
-
Thr
CGT
[ENA]
¡û
>WENV180271340
OBEQ012261916
[OBEQ] groundwater metagenome; groundwater
1943
1868
-
Thr
CGT
[ENA]
¡û
>W141091639
AUZE01000018
Actinomycetota
actinobacterium LLX17 [AUZE]
697622
697547
-
Thr
CGT
[ENA]
¡û
>WENV170574886
FLYN01014866
[FLYN] hot springs metagenome; Sediment
209
134
-
Thr
CGT
[ENA]
¡û
>WENV170954718
MJUI01032117
[MJUI] soil metagenome; viral particles from soil sample MG3
37
112
+
Thr
CGT
[ENA]
¡û
>W09103270
AAJB01000026
Actinomycetota
Nocardioides sp. JS614 [AAJB]
32408
32483
+
Thr
CGT
[ENA]
¡û
>W09127765
ACLF01000538
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
2288
2363
+
Thr
CGT
[ENA]
¡û
>C191056528
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
2436252
2436178
-
Thr
CGT
-
¡û
>W141775187
JOJN01000002
Actinomycetota
Nocardioides aequoreus [JOJN]
508295
508222
-
Thr
CGT
[ENA]
¡û
>W2010309735
CABWLN010000089
Actinomycetota
Nocardioides sp. AX2bis [CABWLN]
24093
24167
+
Thr
CGT
[ENA]
¡û
>W2010471203
JAAGWB010000032
Actinomycetota
Modestobacter muralis DSM 100205 [JAAGWB]
5777
5851
+
Thr
CGT
[ENA]
¡û
>W2010471514
JAAGWH010000030
Actinomycetota
Modestobacter muralis DSM 100205 [JAAGWH]
5777
5851
+
Thr
CGT
[ENA]
¡û
>W2010492997
JAAKGN010000200
Actinomycetota
Modestobacter sp. KNN46-3 [JAAKGN]
1322
1395
+
Thr
CGT
[ENA]
¡û
>W2010609737
JABMLD010000005
Actinomycetota
Rathayibacter sp. VKM Ac-2858 [JABMLD]
370484
370410
-
Thr
CGT
[ENA]
¡û
>W2010609781
JABMLF010000005
Actinomycetota
Rathayibacter sp. VKM Ac-2856 [JABMLF]
370541
370467
-
Thr
CGT
[ENA]
¡û
>W2010613388
JABSNQ010000002
Actinomycetota
Rathayibacter sp. VKM Ac-2835 [JABSNQ]
927361
927435
+
Thr
CGT
[ENA]
¡û
>W2010668637
JACBZR010000001
Actinomycetota
Nocardioides panzhihuensis DSM 26487 [JACBZR]
4904259
4904185
-
Thr
CGT
[ENA]
¡û
>W2010669142
JACCAC010000001
Actinomycetota
Nocardioides perillae DSM 24552 [JACCAC]
283881
283807
-
Thr
CGT
[ENA]
¡û
>W2010670693
JACCBE010000001
Actinomycetota
Nocardioides marinisabuli DSM 18965 [JACCBE]
1735784
1735859
+
Thr
CGT
[ENA]
¡û
>W2010715531
JACHWR010000002
Actinomycetota
Nocardioides soli DSM 105498 [JACHWR]
336038
336112
+
Thr
CGT
[ENA]
¡û
>W2010716307
JACHXG010000011
Actinomycetota
Nocardioides albus CECT 3302 [JACHXG]
148589
148663
+
Thr
CGT
[ENA]
¡û
>W2010744197
JACKXE010000001
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
2051205
2051130
-
Thr
CGT
[ENA]
¡û
>W2011433681
RJKO01000012
Actinomycetota
Rathayibacter sp. PhB186 [RJKO]
59701
59627
-
Thr
CGT
[ENA]
¡û
>W2011434352
RJLA01000017
Actinomycetota
Rathayibacter sp. PhB93 [RJLA]
161601
161527
-
Thr
CGT
[ENA]
¡û
>W2011442265
RJUT01000006
Actinomycetota
Rathayibacter sp. PhB152 [RJUT]
91471
91397
-
Thr
CGT
[ENA]
¡û
>W2011447709
RKHO01000001
Actinomycetota
Marmoricola aurantiacus DSM 12652 [RKHO]
184251
184326
+
Thr
CGT
[ENA]
¡û
>W2011448271
RKHW01000002
Actinomycetota
Rathayibacter sp. PhB127 [RKHW]
373867
373793
-
Thr
CGT
[ENA]
¡û
>W2011448507
RKIB01000011
Actinomycetota
Rathayibacter sp. PhB185 [RKIB]
44535
44609
+
Thr
CGT
[ENA]
¡û
>W2011453486
RKQM01000001
Actinomycetota
Frondihabitans sp. PhB153 [RKQM]
1698672
1698745
+
Thr
CGT
[ENA]
¡û
>W2011454113
RKQW01000001
Actinomycetota
Frondihabitans sp. PhB161 [RKQW]
1698577
1698650
+
Thr
CGT
[ENA]
¡û
>W2011619089
SLUS01000008
Actinomycetota
Rathayibacter sp. PhB192 [SLUS]
75379
75453
+
Thr
CGT
[ENA]
¡û
>W2011619627
SLVD01000008
Actinomycetota
Rathayibacter sp. PhB179 [SLVD]
165190
165116
-
Thr
CGT
[ENA]
¡û
>W2011650247
SNYD01000006
Actinomycetota
Rathayibacter sp. PhB1 [SNYD]
161601
161527
-
Thr
CGT
[ENA]
¡û
>W2011659273
SOEN01000010
Actinomycetota
Rathayibacter sp. PhB151 [SOEN]
23249
23175
-
Thr
CGT
[ENA]
¡û
>W2012018825
VFNJ01000002
Actinomycetota
Nocardioides sp. SLBN-172 [VFNJ]
1516500
1516573
+
Thr
CGT
[ENA]
¡û
>W2012020868
VFOV01000001
Actinomycetota
Nocardioides albertanoniae DSM 25218 [VFOV]
409661
409736
+
Thr
CGT
[ENA]
¡û
>W2012369152
WLCI01000001
Actinomycetota
Nocardioides sp. zg-579 [WLCI]
35785
35858
+
Thr
CGT
[ENA]
¡û
>W2012369203
WLCJ01000003
Actinomycetota
Nocardioides sp. zg-578 [WLCJ]
22991
23064
+
Thr
CGT
[ENA]
¡û
>W2012440537
WUCC01000008
Actinomycetota
Rathayibacter sp. VKM Ac-2754 [WUCC]
159194
159120
-
Thr
CGT
[ENA]
¡û
>W2012440559
WUCD01000001
Actinomycetota
Rathayibacter sp. VKM Ac-2803 [WUCD]
1749109
1749183
+
Thr
CGT
[ENA]
¡û
>W2012442194
WUEK01000003
Actinomycetota
Nocardioides sp. YIM 123512 [WUEK]
349137
349212
+
Thr
CGT
[ENA]
¡û
>W2110037189
BMQT01000012
Actinomycetota
Nocardioides albus JCM 3185 [BMQT]
14581
14507
-
Thr
CGT
[ENA]
¡û
>W2110133163
CAKASO010000006
Actinomycetota
Nocardioides sp. Leaf374 [CAKASO]
18527
18602
+
Thr
CGT
[ENA]
¡û
>W2110201557
JACDTV010000011
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
197961
197886
-
Thr
CGT
[ENA]
¡û
>W2110221025
JACJGL010000021
Actinomycetota
Nocardioides dongkuii 406 [JACJGL]
26168
26241
+
Thr
CGT
[ENA]
¡û
>W2110266316
JACUWQ010000003
Actinomycetota
Nocardioides sp. zg-578 [JACUWQ]
22991
23064
+
Thr
CGT
[ENA]
¡û
>W2110303571
JADCLL010000008
Actinomycetota
Nocardioides kribbensis DSM 16314 [JADCLL]
107421
107496
+
Thr
CGT
[ENA]
¡û
>W2110303608
JADCLM010000013
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
13404
13329
-
Thr
CGT
[ENA]
¡û
>W2110329637
JADKSF010000003
Actinomycetota
Frondihabitans sp. VKM Ac-2883 [JADKSF]
210672
210599
-
Thr
CGT
[ENA]
¡û
>W2110458413
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
1722313
1722238
-
Thr
CGT
[ENA]
¡û
>C201147318
CP044344
Actinomycetota
Nocardioides sp. SB3-45 [CP044344]
2724558
2724483
-
Thr
CGT
-
¡û
>C201197050
CP047173
Actinomycetota
Rathayibacter sp. VKM Ac-2760 [CP047173]
1179525
1179598
+
Thr
CGT
-
¡û
>C201197137
CP047180
Actinomycetota
Rathayibacter festucae VKM Ac-2802 [CP047180]
1100613
1100687
+
Thr
CGT
-
¡û
>C201266394
CP053660
Actinomycetota
Nocardioides sp. zg-579 [CP053660]
259473
259546
+
Thr
CGT
-
¡û
>C211125521
CP059903
Actinomycetota
Nocardioides sp. S-713 [CP059903]
473828
473901
+
Thr
CGT
-
¡û
>C211137463
CP060713
Actinomycetota
Nocardioides mesophilus KACC 16243 [CP060713]
2198457
2198531
+
Thr
CGT
-
¡û
>C211336916
CP075371
Actinomycetota
Nocardioides aquaticus KCTC 9944 [CP075371]
491962
492036
+
Thr
CGT
-
¡û
>C211342514
CP076104
Actinomycetota
Nocardioides sp. LMS-CY [CP076104]
662474
662548
+
Thr
CGT
-
¡û
>C211350181
CP077062
Actinomycetota
Nocardioides sp. G188 [CP077062]
3797382
3797307
-
Thr
CGT
-
¡û
>C211361012
CP077800
Actinomycetota
Modestobacter sp. L9-4 [CP077800]
2819288
2819361
+
Thr
CGT
-
¡û
>C241011911
AP027732
Actinomycetota
Frondihabitans sucicola NBRC 108728 [AP027732]
3605383
3605309
-
Thr
CGT
-
¡û
>C241176385
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
1973764
1973839
+
Thr
CGT
-
¡û
>C241221107
CP113431
Actinomycetota
Nocardioides sp. Arc9.136 [CP113431]
364422
364496
+
Thr
CGT
-
¡û
>W2310010936
BNET01000002
Actinomycetota
Nocardioides sp. OK12 [BNET]
205410
205483
+
Thr
CGT
[ENA]
¡û
>W1511307078
JPMX01000014
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
57622
57697
+
Thr
CGT
[ENA]
¡û
>W1511540046
JZDQ01000043
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
20544
20619
+
Thr
CGT
[ENA]
¡û
>W1610736399
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
298066
298141
+
Thr
CGT
[ENA]
¡û
>W1610737043
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1179137
1179064
-
Thr
CGT
[ENA]
¡û
>W1610737192
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
295022
295097
+
Thr
CGT
[ENA]
¡û
>W1610741088
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
15026
15101
+
Thr
CGT
[ENA]
¡û
>W1710520331
FNFN01000003
Actinomycetota
Nocardioides sp. YR527 [FNFN]
174268
174341
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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