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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.529538 (24 seq.)
>W131027565
AJAL01000004
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
380850
380778
-
Gln
CTG
[ENA]
¡û
>W1711108384
LTTS01000018
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
128935
129007
+
Gln
CTG
[ENA]
¡û
>W1711114902
LTZR01000167
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
39418
39490
+
Gln
CTG
[ENA]
¡û
>W1711187014
LWOS01000027
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
135
63
-
Gln
CTG
[ENA]
¡û
>W131201686
ASWF01000006
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
324885
324957
+
Gln
CTG
[ENA]
¡û
>WENV180406775
OBUQ01000069
[OBUQ] human gut metagenome; faeces
145724
145796
+
Gln
CTG
[ENA]
¡û
>WENV182803547
OJUL01005065
[OJUL] human gut metagenome; human gut
313
385
+
Gln
CTG
[ENA]
¡û
>WENV182828034
OKDE01002485
[OKDE] human gut metagenome; human gut
1674
1746
+
Gln
CTG
[ENA]
¡û
>WENV182953173
OKVX01014376
[OKVX] human gut metagenome; human gut
459
387
-
Gln
CTG
[ENA]
¡û
>WENV170541401
CXPN01002628
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
417
345
-
Gln
CTG
[ENA]
¡û
>WENV170541696
CXPR01003290
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
174
102
-
Gln
CTG
[ENA]
¡û
>W2010277252
CABLCA020000048
Bacillota
Enterococcus raffinosus [CABLCA]
38850
38922
+
Gln
CTG
[ENA]
¡û
>W2012499963
WXOO01000009
Bacillota
Enterococcus raffinosus BIOML-A1 [WXOO]
184
112
-
Gln
CTG
[ENA]
¡û
>W2110158400
JAASIQ010000006
Bacillota
Enterococcus raffinosus K36 [JAASIQ]
145695
145767
+
Gln
CTG
[ENA]
¡û
>C211315422
CP072888
Bacillota
Enterococcus raffinosus F162_2 [CP072888]
1463895
1463823
-
Gln
CTG
-
¡û
>C211388393
CP081846
Bacillota
Enterococcus raffinosus CX012922 [CP081846]
1320271
1320199
-
Gln
CTG
-
¡û
>C231490763
CP104392
Bacillota
Enterococcus raffinosus HG-5 [CP104392]
1797414
1797486
+
Gln
CTG
-
¡û
>C231498023
CP104762
Bacillota
Enterococcus raffinosus ATCC 49464 [CP104762]
1519775
1519703
-
Gln
CTG
-
¡û
>C231498052
CP104764
Bacillota
Enterococcus raffinosus Er676 [CP104764]
1828500
1828572
+
Gln
CTG
-
¡û
>W1610021463
ATKJ02000048
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
38850
38922
+
Gln
CTG
[ENA]
¡û
>W1610066535
BCPU01000078
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
8766
8838
+
Gln
CTG
[ENA]
¡û
>W1710018158
ATKJ02000048
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
38850
38922
+
Gln
CTG
[ENA]
¡û
>W1710063873
BCPU01000078
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
8766
8838
+
Gln
CTG
[ENA]
¡û
>W1710659761
JXLA01000006
Bacillota
Enterococcus raffinosus [JXLA]
2328
2256
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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