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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53078 (10 seq.)
>WENV180327950
OBKU01000171
[OBKU] human gut metagenome; human gut
32357
32444
+
Ile
TAT
[ENA]
¡û
>WENV181030617
ODXJ01000757
[ODXJ] human metagenome; G_DNA_Stool
1995
2082
+
Ile
TAT
[ENA]
¡û
>WENV181142693
OEHI01004921
[OEHI] human metagenome; G_DNA_Stool
95
8
-
Ile
TAT
[ENA]
¡û
>WENV181741232
OGQJ01109552
[OGQJ] human gut metagenome; faeces
62
149
+
Ile
TAT
[ENA]
¡û
>WENV182125901
OHJT01000235
[OHJT] human gut metagenome; feces
18143
18056
-
Ile
TAT
[ENA]
¡û
>WENV182207087
OHPW01000199
[OHPW] human gut metagenome; feces
18081
17994
-
Ile
TAT
[ENA]
¡û
>WENV182230271
OHRL01000225
[OHRL] human gut metagenome; feces
18021
17934
-
Ile
TAT
[ENA]
¡û
>WENV182602472
OJJK01000966
[OJJK] metagenome; faeces
3156
3243
+
Ile
TAT
[ENA]
¡û
>WENV182920346
OKUA01000201
[OKUA] human gut metagenome; feces
31208
31295
+
Ile
TAT
[ENA]
¡û
>WENV170034938
CDYL01028086
[CDYL] gut metagenome; human stools
8922
8835
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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