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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53079 (62 seq.)
>W1711337961
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1711338036
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1711338065
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
120441
120352
-
Ser
TGA
[ENA]
¡û
>W1711751596
MUNW01000062
Alphaproteobacteria
Sinorhizobium sp. A49 [MUNW]
74330
74241
-
Ser
TGA
[ENA]
¡û
>C171105033
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3133236
3133147
-
Ser
TGA
-
¡û
>W131160073
AQWH01000002
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
273650
273561
-
Ser
TGA
[ENA]
¡û
>W131163311
AQZQ01000005
Alphaproteobacteria
Ensifer sp. BR816 BR816 [AQZQ]
1543467
1543556
+
Ser
TGA
[ENA]
¡û
>WENV180103372
OAPA01022731
[OAPA] marine metagenome; ENVO:00002010
356
445
+
Ser
TGA
[ENA]
¡û
>WENV180114529
OAPS01015990
[OAPS] marine metagenome; sea water
247
158
-
Ser
TGA
[ENA]
¡û
>W141180695
AYGY02000185
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
4588
4499
-
Ser
TGA
[ENA]
¡û
>WENV170190910
CEPC01173600
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
327
238
-
Ser
TGA
[ENA]
¡û
>WENV170229336
CEQG01106661
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
196
285
+
Ser
TGA
[ENA]
¡û
>WENV170500219
CEVT01379890
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2552
2641
+
Ser
TGA
[ENA]
¡û
>WENV170529224
CEWJ01115812
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
625
714
+
Ser
TGA
[ENA]
¡û
>WENV170800695
MDSV01234538
[MDSV] marine metagenome; seawater
72884
72795
-
Ser
TGA
[ENA]
¡û
>WENV170846063
MDTA01035609
[MDTA] marine metagenome; seawater
747
836
+
Ser
TGA
[ENA]
¡û
>C181075725
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
1672936
1673025
+
Ser
TGA
-
¡û
>C181099201
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
2031954
2032043
+
Ser
TGA
-
¡û
>W1910636517
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W1910636574
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W1910658184
MBFK01000008
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
8126
8215
+
Ser
TGA
[ENA]
¡û
>W1911409625
NWTB01000003
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W1911409739
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W1911409957
NWTH01000005
Alphaproteobacteria
Sinorhizobium sp. BJ1 [NWTH]
334575
334486
-
Ser
TGA
[ENA]
¡û
>W1810365595
PVUG01000026
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
5196
5107
-
Ser
TGA
[ENA]
¡û
>W1810665658
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
2951810
2951899
+
Ser
TGA
[ENA]
¡û
>C151072545
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3457463
3457374
-
Ser
TGA
[Ensembl]
¡û
>W2010591184
JABEKT010000001
Alphaproteobacteria
Ensifer adhaerens Lc04 [JABEKT]
2346136
2346047
-
Ser
TGA
[ENA]
¡û
>W2010591303
JABEKV010000004
Alphaproteobacteria
Ensifer psoraleae CCBAU 65732 [JABEKV]
532079
531990
-
Ser
TGA
[ENA]
¡û
>W2010636391
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
610623
610535
-
Ser
TGA
[ENA]
¡û
>W2010641074
JABWDU010000005
Alphaproteobacteria
Ensifer sp. HO-A22 [JABWDU]
352200
352111
-
Ser
TGA
[ENA]
¡û
>W2010725243
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
295640
295551
-
Ser
TGA
[ENA]
¡û
>W2010727719
JACIGA010000025
Alphaproteobacteria
Sinorhizobium terangae SEMIA 6460 [JACIGA]
8408
8497
+
Ser
TGA
[ENA]
¡û
>W2010783795
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W2010783852
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W2010804815
MBFK01000008
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
8126
8215
+
Ser
TGA
[ENA]
¡û
>W2011136463
NWTB01000003
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W2011136577
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W2011136795
NWTH01000005
Alphaproteobacteria
Sinorhizobium sp. BJ1 [NWTH]
334575
334486
-
Ser
TGA
[ENA]
¡û
>W2011627786
SMAR01000046
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
15366
15455
+
Ser
TGA
[ENA]
¡û
>W2011685612
SRXN01000033
Alphaproteobacteria
Ensifer sp. MPMI2T [SRXN]
9779
9868
+
Ser
TGA
[ENA]
¡û
>W2011780620
UBWJ01000001
Alphaproteobacteria
Rhizobiales bacterium [UBWJ]
285185
285274
+
Ser
TGA
[ENA]
¡û
>W2011782308
UBXV01000021
Alphaproteobacteria
Rhizobiales bacterium [UBXV]
47698
47609
-
Ser
TGA
[ENA]
¡û
>W2011792701
UCGX01000006
Alphaproteobacteria
Rhizobiales bacterium [UCGX]
47721
47632
-
Ser
TGA
[ENA]
¡û
>W2011976153
VCLB01000007
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
45531
45442
-
Ser
TGA
[ENA]
¡û
>W2012341039
WITC01000084
Alphaproteobacteria
Sinorhizobium terangae USDA4894 [WITC]
37107
37018
-
Ser
TGA
[ENA]
¡û
>W2110290506
JACYUD010000003
Alphaproteobacteria
Rhizobium sp. CFBP 8762 CFBP8762 [JACYUD]
18717
18628
-
Ser
TGA
[ENA]
¡û
>W2110537925
JAGGJR010000012
Alphaproteobacteria
Ensifer adhaerens DSM 18131 [JAGGJR]
190490
190401
-
Ser
TGA
[ENA]
¡û
>W2110537989
JAGGJT010000001
Alphaproteobacteria
Ensifer mexicanus DSM 18446 [JAGGJT]
257716
257627
-
Ser
TGA
[ENA]
¡û
>C211232416
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2215532
2215621
+
Ser
TGA
-
¡û
>C241055957
CP041238
Alphaproteobacteria
Sinorhizobium mexicanum ITTG R7 [CP041238]
2038707
2038618
-
Ser
TGA
-
¡û
>W2110803100
WVSP01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0031 [WVSP]
910316
910405
+
Ser
TGA
[ENA]
¡û
>C241245125
CP121659
Alphaproteobacteria
Sinorhizobium terangae CB3126 [CP121659]
1375131
1375042
-
Ser
TGA
-
¡û
>W1511694099
LGAP01000001
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
759427
759338
-
Ser
TGA
[ENA]
¡û
>C121014588
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
4218629
4218718
+
Ser
TGA
[Ensembl]
¡û
>C161070389
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1915403
1915314
-
Ser
TGA
[Ensembl]
¡û
>W121066414
AJQU01000097
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
34792
34703
-
Ser
TGA
[ENA]
¡û
>W1610597376
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
>W1611066889
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1611066964
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1611066993
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
120441
120352
-
Ser
TGA
[ENA]
¡û
>W1710718700
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK