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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53139 (54 seq.)
>W1710806537
LKBA01000019
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
225322
225411
+
Ser
GGA
[ENA]
¡û
>W1711642856
MPZQ01000014
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
14798
14887
+
Ser
GGA
[ENA]
¡û
>W1711642973
MPZT01000003
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
634727
634638
-
Ser
GGA
[ENA]
¡û
>W1711643015
MPZU01000002
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
682813
682724
-
Ser
GGA
[ENA]
¡û
>W1711643069
MPZV01000003
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
14798
14887
+
Ser
GGA
[ENA]
¡û
>W1711643165
MPZX01000003
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
604516
604427
-
Ser
GGA
[ENA]
¡û
>W1711959000
NBXF01000006
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
110486
110575
+
Ser
GGA
[ENA]
¡û
>WENV180585667
OCOL01056698
[OCOL] marine metagenome; ENVO:00002010
105
16
-
Ser
GGA
[ENA]
¡û
>WENV170485456
CEVN01107228
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
993
1082
+
Ser
GGA
[ENA]
¡û
>WENV170646344
JQGR01000057
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
11038
11127
+
Ser
GGA
[ENA]
¡û
>WENV170704947
LLEO01000013
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
23915
23826
-
Ser
GGA
[ENA]
¡û
>WENV170813530
MDSW01201538
[MDSW] marine metagenome; seawater
2692
2603
-
Ser
GGA
[ENA]
¡û
>W1911538395
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
1077924
1078013
+
Ser
GGA
[ENA]
¡û
>W1911575808
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1784756
1784845
+
Ser
GGA
[ENA]
¡û
>W1810913136
QVMW01000013
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
2801
2712
-
Ser
GGA
[ENA]
¡û
>W2010137684
BLJE01000005
Alphaproteobacteria
Litoreibacter sp. K6 [BLJE]
135124
135035
-
Ser
GGA
[ENA]
¡û
>W2010469909
JAAGOY010000004
Alphaproteobacteria
Aliiroseovarius sp. PrR006 [JAAGOY]
730180
730091
-
Ser
GGA
[ENA]
¡û
>W2011168625
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
1077924
1078013
+
Ser
GGA
[ENA]
¡û
>W2011185622
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1784756
1784845
+
Ser
GGA
[ENA]
¡û
>W2011524362
SAIT01000022
Alphaproteobacteria
Aliiroseovarius sp. A6024 [SAIT]
4632
4543
-
Ser
GGA
[ENA]
¡û
>W2011654478
SOBC01000002
Alphaproteobacteria
Thioclava sp. ES.032 [SOBC]
3215376
3215465
+
Ser
GGA
[ENA]
¡û
>W2012037091
VICH01000004
Alphaproteobacteria
Aliiroseovarius halocynthiae MA1-10 [VICH]
696688
696777
+
Ser
GGA
[ENA]
¡û
>W2012102528
VOGO01000001
Alphaproteobacteria
Phaeobacter marinintestinus UB-M7 [VOGO]
697
608
-
Ser
GGA
[ENA]
¡û
>W2012228329
WBJS01000003
Alphaproteobacteria
Thioclava sp. JE_KL1 [WBJS]
2135
2046
-
Ser
GGA
[ENA]
¡û
>W2012234965
WBXQ01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-a-104 [WBXQ]
10960
10871
-
Ser
GGA
[ENA]
¡û
>W2012235009
WBXR01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-a-134 [WBXR]
348066
348155
+
Ser
GGA
[ENA]
¡û
>W2012235050
WBXS01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-a-151 [WBXS]
9261
9172
-
Ser
GGA
[ENA]
¡û
>W2012235125
WBXT01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-d-517 [WBXT]
999537
999448
-
Ser
GGA
[ENA]
¡û
>W2012235165
WBXU01000007
Alphaproteobacteria
Aliiroseovarius sp. xm-g-7 [WBXU]
224464
224553
+
Ser
GGA
[ENA]
¡û
>W2012235204
WBXV01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-309 [WBXV]
43450
43361
-
Ser
GGA
[ENA]
¡û
>W2012235250
WBXW01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-314 [WBXW]
347889
347978
+
Ser
GGA
[ENA]
¡û
>W2012235296
WBXX01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-339-2 [WBXX]
9261
9172
-
Ser
GGA
[ENA]
¡û
>W2012235352
WBXY01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-354 [WBXY]
43450
43361
-
Ser
GGA
[ENA]
¡û
>W2012235396
WBXZ01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-378 [WBXZ]
348114
348203
+
Ser
GGA
[ENA]
¡û
>W2012235443
WBYA01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-m-379 [WBYA]
10960
10871
-
Ser
GGA
[ENA]
¡û
>W2012235493
WBYB01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-v-201 [WBYB]
43450
43361
-
Ser
GGA
[ENA]
¡û
>W2012235538
WBYC01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-v-204 [WBYC]
10960
10871
-
Ser
GGA
[ENA]
¡û
>W2012235585
WBYD01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-v-208 [WBYD]
347841
347930
+
Ser
GGA
[ENA]
¡û
>W2012235634
WBYE01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-v-209 [WBYE]
347889
347978
+
Ser
GGA
[ENA]
¡û
>W2012235684
WBYF01000003
Alphaproteobacteria
Aliiroseovarius sp. xm-v-225 [WBYF]
348106
348195
+
Ser
GGA
[ENA]
¡û
>W2110685692
JAIMIA010000012
Alphaproteobacteria
Tateyamaria pelophila DSM 17270 [JAIMIA]
7947
7858
-
Ser
GGA
[ENA]
¡û
>C211094083
CP053562
Alphaproteobacteria
Thioclava electrotropha Elox9 [CP053562]
1948225
1948314
+
Ser
GGA
-
¡û
>C231167778
CP080772
Alphaproteobacteria
Aliiroseovarius crassostreae S044 [CP080772]
1657989
1657900
-
Ser
GGA
-
¡û
>C231167827
CP080774
Alphaproteobacteria
Aliiroseovarius crassostreae S051 [CP080774]
1631754
1631665
-
Ser
GGA
-
¡û
>C231167876
CP080776
Alphaproteobacteria
Aliiroseovarius crassostreae S056 [CP080776]
1681563
1681474
-
Ser
GGA
-
¡û
>C231167925
CP080778
Alphaproteobacteria
Aliiroseovarius crassostreae S128 [CP080778]
1628248
1628159
-
Ser
GGA
-
¡û
>C231167974
CP080780
Alphaproteobacteria
Aliiroseovarius crassostreae S137 [CP080780]
1672781
1672692
-
Ser
GGA
-
¡û
>C231167992
CP080782
Alphaproteobacteria
Aliiroseovarius crassostreae S202 [CP080782]
964658
964747
+
Ser
GGA
-
¡û
>C231168072
CP080784
Alphaproteobacteria
Aliiroseovarius crassostreae S204 [CP080784]
1689807
1689718
-
Ser
GGA
-
¡û
>C231168121
CP080786
Alphaproteobacteria
Aliiroseovarius crassostreae S212 [CP080786]
1655853
1655764
-
Ser
GGA
-
¡û
>C231169852
CP081153
Alphaproteobacteria
Aliiroseovarius sp. M344 [CP081153]
1991021
1990932
-
Ser
GGA
-
¡û
>W1610670311
LKBA01000019
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
225322
225411
+
Ser
GGA
[ENA]
¡û
>W1710555066
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
1500578
1500667
+
Ser
GGA
[ENA]
¡û
>W1710578598
FPBS01000005
Alphaproteobacteria
Aliiroseovarius crassostreae [FPBS]
1052
963
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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