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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.531575 (32 seq.)
>W1710876270
LMPC01000001
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
524484
524409
-
Ala
CGC
[ENA]
¡û
>W1711724084
MTPV01000064
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
44649
44722
+
Ala
CGC
[ENA]
¡û
>C001011
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
3217490
3217415
-
Ala
CGC
[Ensembl]
¡û
>WENV180016392
FSUT01000783
[FSUT] metagenome; soil
424
497
+
Ala
CGC
[ENA]
¡û
>WENV180018452
FSZH01000431
[FSZH] metagenome; soil
603
676
+
Ala
CGC
[ENA]
¡û
>W141702003
JMLE01000002
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
77703
77630
-
Ala
CGC
[ENA]
¡û
>W09102042
AAHG01000004
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
188401
188326
-
Ala
CGC
[ENA]
¡û
>W1911532729
OIVI01000258
Actinomycetota
Arthrobacter alpinus [OIVI]
47715
47788
+
Ala
CGC
[ENA]
¡û
>W1810167376
PJIL01000001
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
272237
272310
+
Ala
CGC
[ENA]
¡û
>W2010158311
CAAKGY010000018
Actinomycetota
Arthrobacter sp. DR-2P [CAAKGY]
36213
36140
-
Ala
CGC
[ENA]
¡û
>W2011165416
OIVI01000258
Actinomycetota
Arthrobacter alpinus [OIVI]
47715
47788
+
Ala
CGC
[ENA]
¡û
>W2011377304
RBNH01000002
Actinomycetota
Pseudarthrobacter phenanthrenivorans J015 [RBNH]
14670
14743
+
Ala
CGC
[ENA]
¡û
>W2011981595
VDEV01000025
Actinomycetota
Arthrobacter sp. BB-1 [VDEV]
36213
36140
-
Ala
CGC
[ENA]
¡û
>W2012031123
VHJD01000003
Actinomycetota
Pseudarthrobacter phenanthrenivorans MHSD1 [VHJD]
233844
233917
+
Ala
CGC
[ENA]
¡û
>W2012408744
WOWL01000001
Actinomycetota
Pseudarthrobacter sp. GA104 [WOWL]
3575905
3575979
+
Ala
CGC
[ENA]
¡û
>W2110499273
JAFIBI010000001
Actinomycetota
Arthrobacter sp. PvP023 [JAFIBI]
1810858
1810931
+
Ala
CGC
[ENA]
¡û
>W2110499499
JAFIBP010000001
Actinomycetota
Arthrobacter sp. PvP102 [JAFIBP]
2041393
2041320
-
Ala
CGC
[ENA]
¡û
>W2110499553
JAFIBQ010000001
Actinomycetota
Arthrobacter sp. PvP103 [JAFIBQ]
937860
937787
-
Ala
CGC
[ENA]
¡û
>W2110543294
JAGGPL010000003
Actinomycetota
Arthrobacter sp. ISL-48 [JAGGPL]
840246
840173
-
Ala
CGC
[ENA]
¡û
>W2110543445
JAGGPO010000018
Actinomycetota
Arthrobacter sp. ISL-69 [JAGGPO]
315325
315399
+
Ala
CGC
[ENA]
¡û
>W2110552592
JAGINL010000001
Actinomycetota
Pseudarthrobacter sp. PvP004 [JAGINL]
552967
553040
+
Ala
CGC
[ENA]
¡û
>W1510018557
BBUE01000482
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
689
762
+
Ala
CGC
[ENA]
¡û
>C231051373
CP044532
Actinomycetota
Arthrobacter sp. CDRTa11 [CP044532]
3690943
3690870
-
Ala
CGC
-
¡û
>C231161117
CP078079
Actinomycetota
Pseudarthrobacter sp. L1SW [CP078079]
2787366
2787293
-
Ala
CGC
-
¡û
>C231467444
CP103288
Actinomycetota
Pseudarthrobacter sp. NS4 [CP103288]
2969922
2969849
-
Ala
CGC
-
¡û
>C231527678
CP110114
Actinomycetota
Arthrobacter sp. YA7-1 [CP110114]
3183014
3182941
-
Ala
CGC
-
¡û
>C241300162
CP132204
Actinomycetota
Arthrobacter oryzae AO2021 [CP132204]
253941
253868
-
Ala
CGC
-
¡û
>W2130044319
UZAA01000258
Actinomycetota
Arthrobacter alpinus [UZAA]
47715
47788
+
Ala
CGC
[ENA]
¡û
>C11101009
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
2885593
2885520
-
Ala
CGC
[Ensembl]
¡û
>W121086831
AKKK01000047
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
203464
203537
+
Ala
CGC
[ENA]
¡û
>C131002322
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
3302378
3302305
-
Ala
CGC
[Ensembl]
¡û
>W1610738616
LMPC01000001
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
524484
524409
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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