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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53302 (83 seq.)
>W1710793530
LJPL01000010
Bacillota
Streptococcus pasteurianus [LJPL]
37736
37651
-
Leu
AAG
[ENA]
¡û
>W1710989091
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1116482
1116567
+
Leu
AAG
[ENA]
¡û
>W1711006300
LQOF01000364
Bacillota
Streptococcus gallolyticus [LQOF]
13006
13091
+
Leu
AAG
[ENA]
¡û
>W1711019339
LQXV01000400
Bacillota
Streptococcus gallolyticus [LQXV]
1441
1356
-
Leu
AAG
[ENA]
¡û
>W1711080500
LSRA01000032
Bacillota
Streptococcus pasteurianus [LSRA]
18037
18122
+
Leu
AAG
[ENA]
¡û
>W1711207029
LXFC01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
18632
18717
+
Leu
AAG
[ENA]
¡û
>W131232308
AUJD01000008
Bacillota
Streptococcus equinus B315 [AUJD]
19555
19640
+
Leu
AAG
[ENA]
¡û
>WENV180116686
OAQX01000100
[OAQX] human gut metagenome; ENVO:feces
4225
4140
-
Leu
AAG
[ENA]
¢þ
>WENV180239250
OBDB01000287
[OBDB] human gut metagenome; human gut
11686
11771
+
Leu
AAG
[ENA]
¢þ
>WENV180400555
OBRI01002587
[OBRI] human gut metagenome; ENVO:feces
265
350
+
Leu
AAG
[ENA]
¢þ
>WENV180401907
OBRN01009958
[OBRN] human gut metagenome; ENVO:feces
187
272
+
Leu
AAG
[ENA]
¢þ
>WENV180403208
OBRR01039903
[OBRR] human gut metagenome; ENVO:feces
146
231
+
Leu
AAG
[ENA]
¢þ
>WENV180405615
OBTM01048756
[OBTM] human gut metagenome; ENVO:feces
88
3
-
Leu
AAG
[ENA]
¢þ
>WENV180415662
OBVF01000071
[OBVF] human gut metagenome; faeces
18058
18143
+
Leu
AAG
[ENA]
¢þ
>W141071806
ASKA01000007
Bacillota
Streptococcus sp. HSISB1 [ASKA]
18923
19008
+
Leu
AAG
[ENA]
¡û
>WENV181338309
OFMF01001487
[OFMF] human gut metagenome; human gut
11750
11835
+
Leu
AAG
[ENA]
¢þ
>WENV181366144
OFPS01001057
[OFPS] human gut metagenome; human gut
17989
18074
+
Leu
AAG
[ENA]
¢þ
>W08006799
ABJK02000007
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
15968
15883
-
Leu
AAG
[ENA]
¡û
>WENV181438747
OGDJ01004894
[OGDJ] metagenome; Human gut stool
1310
1225
-
Leu
AAG
[ENA]
¢þ
>WENV181527112
OGHK01000316
[OGHK] metagenome; Human gut stool
32160
32075
-
Leu
AAG
[ENA]
¢þ
>WENV181557937
OGIW01000634
[OGIW] metagenome; Human gut stool
6406
6321
-
Leu
AAG
[ENA]
¢þ
>WENV181559604
OGIZ01006444
[OGIZ] metagenome; Human gut stool
384
299
-
Leu
AAG
[ENA]
¢þ
>WENV181564152
OGJH01001941
[OGJH] metagenome; Human gut stool
4068
3983
-
Leu
AAG
[ENA]
¢þ
>WENV181568329
OGJK01001450
[OGJK] metagenome; Human gut stool
18154
18239
+
Leu
AAG
[ENA]
¢þ
>WENV181576176
OGJV01000721
[OGJV] metagenome; Human gut stool
133
48
-
Leu
AAG
[ENA]
¢þ
>WENV181579736
OGJZ01000858
[OGJZ] metagenome; Human gut stool
27277
27192
-
Leu
AAG
[ENA]
¢þ
>WENV181879355
OGXF01000194
[OGXF] human gut metagenome; faeces
37705
37620
-
Leu
AAG
[ENA]
¢þ
>WENV181948484
OGZE01004598
[OGZE] human gut metagenome; faeces
3151
3236
+
Leu
AAG
[ENA]
¢þ
>WENV181998012
OHAU01013025
[OHAU] human gut metagenome; faeces
797
882
+
Leu
AAG
[ENA]
¢þ
>WENV182099328
OHHR01000705
[OHHR] human gut metagenome; feces
17991
18076
+
Leu
AAG
[ENA]
¢þ
>WENV182149110
OHLG01000026
[OHLG] human gut metagenome; feces
18024
18109
+
Leu
AAG
[ENA]
¢þ
>WENV182194325
OHPC01000677
[OHPC] human gut metagenome; feces
1151
1066
-
Leu
AAG
[ENA]
¢þ
>WENV182275467
OHUN01000703
[OHUN] human gut metagenome; feces
361
276
-
Leu
AAG
[ENA]
¢þ
>WENV182406167
OIEX01000994
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
1086
1171
+
Leu
AAG
[ENA]
¢þ
>WENV182409797
OIFJ01000346
[OIFJ] human gut metagenome; stool
1547
1462
-
Leu
AAG
[ENA]
¢þ
>WENV182814505
OJYK01000217
[OJYK] human gut metagenome; human gut
18696
18781
+
Leu
AAG
[ENA]
¢þ
>WENV182842401
OKIE01000077
[OKIE] human gut metagenome; human gut
18058
18143
+
Leu
AAG
[ENA]
¢þ
>WENV182854703
OKMW01000228
[OKMW] human gut metagenome; human gut
18058
18143
+
Leu
AAG
[ENA]
¢þ
>WENV182961809
OKWL01000392
[OKWL] human gut metagenome; stool
18013
18098
+
Leu
AAG
[ENA]
¢þ
>WENV182991903
OLAR01019725
[OLAR] human gut metagenome; human gut
559
644
+
Leu
AAG
[ENA]
¢þ
>WENV183003805
OLCT01014888
[OLCT] human gut metagenome; human gut
909
824
-
Leu
AAG
[ENA]
¢þ
>WENV183605951
OODN01000152
[OODN] human gut metagenome; human gut
37703
37618
-
Leu
AAG
[ENA]
¢þ
>WENV183609133
OODQ01001706
[OODQ] human gut metagenome; human gut
64
149
+
Leu
AAG
[ENA]
¢þ
>C191203861
LR134282
Bacillota
Streptococcus equinus NCTC8140 [LR134282]
297411
297496
+
Leu
AAG
-
¡û
>C191204461
LR134292
Bacillota
Streptococcus equinus NCTC10389 [LR134292]
149730
149815
+
Leu
AAG
-
¡û
>C191222967
LR594042
Bacillota
Streptococcus equinus NCTC8133 [LR594042]
291579
291664
+
Leu
AAG
-
¡û
>W141803128
JPGC01000007
Bacillota
Streptococcus equinus [JPGC]
19500
19585
+
Leu
AAG
[ENA]
¡û
>C141001289
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
235688
235773
+
Leu
AAG
[Ensembl]
¡û
>W1910550564
FZRA01000007
Bacillota
Streptococcus equinus AR3 [FZRA]
19223
19308
+
Leu
AAG
[ENA]
¡û
>W1910889497
NETH01000012
Bacillota
Streptococcus gallolyticus BI02 [NETH]
34897
34812
-
Leu
AAG
[ENA]
¡û
>W1810069614
PEBM01000049
Bacillota
Streptococcus macedonicus 27MV [PEBM]
32769
32684
-
Leu
AAG
[ENA]
¡û
>W1810069639
PEBN01000010
Bacillota
Streptococcus macedonicus 19AS [PEBN]
52588
52503
-
Leu
AAG
[ENA]
¡û
>W1810188079
PKIB01000011
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
18125
18210
+
Leu
AAG
[ENA]
¡û
>W1810823947
QSHE01000026
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
4077
3992
-
Leu
AAG
[ENA]
¡û
>W1810907447
QVHT01000008
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
18056
18141
+
Leu
AAG
[ENA]
¡û
>W1810907649
QVHX01000014
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
18061
18146
+
Leu
AAG
[ENA]
¡û
>C11120580
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
333110
333195
+
Leu
AAG
[Ensembl]
¡û
>C11121171
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
260825
260910
+
Leu
AAG
[Ensembl]
¡û
>C121010331
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
288257
288342
+
Leu
AAG
[Ensembl]
¡û
>C121017996
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
302368
302453
+
Leu
AAG
[Ensembl]
¡û
>W1610514142
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
223608
223693
+
Leu
AAG
[ENA]
¡û
>W1610843967
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1116482
1116567
+
Leu
AAG
[ENA]
¡û
>W1610856950
LQOF01000364
Bacillota
Streptococcus gallolyticus [LQOF]
13006
13091
+
Leu
AAG
[ENA]
¡û
>W1610867627
LQXV01000400
Bacillota
Streptococcus gallolyticus [LQXV]
1441
1356
-
Leu
AAG
[ENA]
¡û
>W1610919367
LSRA01000032
Bacillota
Streptococcus pasteurianus [LSRA]
18037
18122
+
Leu
AAG
[ENA]
¡û
>W1610995059
LXFC01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
18632
18717
+
Leu
AAG
[ENA]
¡û
>W1710504918
FMTH01000007
Bacillota
Streptococcus equinus [FMTH]
19873
19958
+
Leu
AAG
[ENA]
¡û
>W1710519249
FNEP01000013
Bacillota
Streptococcus equinus [FNEP]
18948
19033
+
Leu
AAG
[ENA]
¡û
>W1710520161
FNFJ01000008
Bacillota
Streptococcus gallolyticus [FNFJ]
18924
19009
+
Leu
AAG
[ENA]
¡û
>W1710521633
FNGN01000008
Bacillota
Streptococcus gallolyticus [FNGN]
18924
19009
+
Leu
AAG
[ENA]
¡û
>W1710522054
FNGX01000008
Bacillota
Streptococcus equinus [FNGX]
19847
19932
+
Leu
AAG
[ENA]
¡û
>W1710526254
FNKE01000004
Bacillota
Streptococcus equinus [FNKE]
32395
32310
-
Leu
AAG
[ENA]
¡û
>W1710528068
FNMW01000004
Bacillota
Streptococcus equinus [FNMW]
32526
32441
-
Leu
AAG
[ENA]
¡û
>W1710538113
FNUH01000010
Bacillota
Streptococcus gallolyticus [FNUH]
18456
18541
+
Leu
AAG
[ENA]
¡û
>W1710541028
FNXZ01000006
Bacillota
Streptococcus sp. 45 [FNXZ]
19816
19901
+
Leu
AAG
[ENA]
¡û
>W1710541988
FNYU01000009
Bacillota
Streptococcus equinus [FNYU]
19510
19595
+
Leu
AAG
[ENA]
¡û
>W1710545445
FOBM01000010
Bacillota
Streptococcus gallolyticus [FOBM]
33068
32983
-
Leu
AAG
[ENA]
¡û
>W1710548119
FODM01000005
Bacillota
Streptococcus equinus [FODM]
32295
32210
-
Leu
AAG
[ENA]
¡û
>W1710549986
FOEX01000009
Bacillota
Streptococcus equinus [FOEX]
19761
19846
+
Leu
AAG
[ENA]
¡û
>W1710550880
FOFQ01000013
Bacillota
Streptococcus equinus [FOFQ]
32264
32179
-
Leu
AAG
[ENA]
¡û
>W1710558558
FOLZ01000006
Bacillota
Streptococcus gallolyticus [FOLZ]
19714
19799
+
Leu
AAG
[ENA]
¡û
>W1710562037
FOOP01000007
Bacillota
Streptococcus equinus [FOOP]
32191
32106
-
Leu
AAG
[ENA]
¡û
>W1710578356
FPBN01000008
Bacillota
Streptococcus gallolyticus [FPBN]
19720
19805
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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