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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.533102 (29 seq.)
>W131063630
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
730173
730100
-
Cys
GCA
[ENA]
¡û
>W131171432
ARGF01000030
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
30412
30339
-
Cys
GCA
[ENA]
¡û
>W1711373543
MDVM01000014
Gammaproteobacteria
Gammaproteobacteria bacterium 2W06 [MDVM]
8850
8923
+
Cys
GCA
[ENA]
¡û
>WENV180362282
OBNW01096268
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
177
250
+
Cys
GCA
[ENA]
¡û
>WENV181169873
OEIV010013110
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2
75
+
Cys
GCA
[ENA]
¡û
>ENV08001192
ABMS01005266
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
30
103
+
Cys
GCA
[ENA]
¡û
>WENV170650124
JRYD01012526
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
829
756
-
Cys
GCA
[ENA]
¡û
>WENV170652217
JRYH01000114
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
51254
51327
+
Cys
GCA
[ENA]
¡û
>WENV170702205
LKMJ01000840
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12203
12276
+
Cys
GCA
[ENA]
¡û
>C141004252
CP005990
Gammaproteobacteria
Spiribacter curvatus UAH-SP71 [CP005990]
867578
867651
+
Cys
GCA
[Ensembl]
¡û
>SRA1001250
SRR001059.4358
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
29
102
+
Cys
GCA
[SRA]
>W2010803709
MAOJ01000001
Gammaproteobacteria
Spiribacter roseus SSL4 [MAOJ]
535711
535784
+
Cys
GCA
[ENA]
¡û
>W2010803748
MAOK01000032
Gammaproteobacteria
Spiribacter roseus SSL25 [MAOK]
3974
4047
+
Cys
GCA
[ENA]
¡û
>W2010803824
MAOL01000019
Gammaproteobacteria
Spiribacter roseus SSL97 [MAOL]
27280
27353
+
Cys
GCA
[ENA]
¡û
>W2010803858
MAOM01000015
Gammaproteobacteria
Spiribacter sp. SSL99 [MAOM]
214759
214832
+
Cys
GCA
[ENA]
¡û
>W2011580816
SHLI01000001
Gammaproteobacteria
Halopeptonella vilamensis DSM 21056 [SHLI]
819565
819492
-
Cys
GCA
[ENA]
¡û
>W2012089850
VMKO01000002
Gammaproteobacteria
Halopeptonella vilamensis DSM 21056 [VMKO]
119174
119247
+
Cys
GCA
[ENA]
¡û
>W2012089879
VMKP01000002
Gammaproteobacteria
Spiribacter aquaticus SP30 [VMKP]
71718
71645
-
Cys
GCA
[ENA]
¡û
>W2012352635
WJPP01000001
Gammaproteobacteria
Spiribacter sp. C176 [WJPP]
218728
218655
-
Cys
GCA
[ENA]
¡û
>W2012400754
WNXE01000103
Gammaproteobacteria
Arhodomonas sp. KWT [WNXE]
5534
5607
+
Cys
GCA
[ENA]
¡û
>ENV09003233
ADGO01012728
Compost metagenome contig00001
249
176
-
Cys
GCA
[ENA]
¡û
>ENV09003281
ADGO01015667
Compost metagenome contig00001
804
731
-
Cys
GCA
[ENA]
¡û
>ENV09003288
ADGO01016626
Compost metagenome contig00001
336
409
+
Cys
GCA
[ENA]
¡û
>W2110119386
CAJPFC010000095
Gammaproteobacteria
Gammaproteobacteria bacterium [CAJPFC]
32888
32961
+
Cys
GCA
[ENA]
¡û
>C201024515
CP016382
Gammaproteobacteria
Spiribacter roseus SSL50 [CP016382]
763057
763130
+
Cys
GCA
-
¡û
>W2110748323
MBFX01000002
Gammaproteobacteria
Spiribacter salinus M7-304 [MBFX]
432564
432637
+
Cys
GCA
[ENA]
¡û
>C241105059
CP046046
Gammaproteobacteria
Spiribacter sp. 2438 [CP046046]
856798
856871
+
Cys
GCA
-
¡û
>C161038385
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1769749
1769822
+
Cys
GCA
[Ensembl]
¡û
>C131016224
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
809547
809620
+
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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