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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.533138 (55 seq.)
>W1710938638
LONE02000004
Gammaproteobacteria
Stutzerimonas balearica [LONE]
17440
17365
-
Thr
CGT
[ENA]
¡û
>W1710987304
LPUO01000002
Gammaproteobacteria
Aeromonas schubertii [LPUO]
75925
76000
+
Thr
CGT
[ENA]
¡û
>W1711513446
MLFS01000018
Gammaproteobacteria
Pantoea wallisii [MLFS]
18707
18632
-
Thr
CGT
[ENA]
¡û
>W131124597
APVG01000049
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
14591
14666
+
Thr
CGT
[ENA]
¡û
>C028362
CP000680
Gammaproteobacteria
Pseudomonas mendocina [CP000680]
3523344
3523269
-
Thr
CGT
[Ensembl]
¡û
>W141104334
AVOF01000003
Gammaproteobacteria
Pseudomonas sp. EGD-AK9 [AVOF]
2024
1949
-
Thr
CGT
[ENA]
¡û
>WENV181415908
OGCL01034434
[OGCL] hot springs metagenome; Hot spring water
1029
954
-
Thr
CGT
[ENA]
¡û
>W141230762
BATI01000016
Gammaproteobacteria
Pseudomonas alcaligenes NBRC 14159 [BATI]
31966
31891
-
Thr
CGT
[ENA]
¡û
>WENV170413794
CEUK01145871
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
243
318
+
Thr
CGT
[ENA]
¡û
>WENV170657905
JTFP01031765
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1278
1203
-
Thr
CGT
[ENA]
¡û
>WENV170658088
JTFP01053600
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
26
101
+
Thr
CGT
[ENA]
¡û
>WENV170658390
JTFP01099844
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
185
260
+
Thr
CGT
[ENA]
¡û
>WENV170779437
LZQO01000063
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
14650
14725
+
Thr
CGT
[ENA]
¡û
>WENV170965132
MTET01003110
[MTET] soil metagenome; garden soil control
4481
4556
+
Thr
CGT
[ENA]
¡û
>WENV170965424
MTEU01002093
[MTEU] soil metagenome; naturally attenuated soil
1015
940
-
Thr
CGT
[ENA]
¡û
>WENV170965612
MTEU01004958
[MTEU] soil metagenome; naturally attenuated soil
52363
52438
+
Thr
CGT
[ENA]
¡û
>WENV170965820
MTEV01005534
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
6690
6615
-
Thr
CGT
[ENA]
¡û
>WENV170966367
MTEX01007875
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
541
616
+
Thr
CGT
[ENA]
¡û
>WENV170966558
MTEX01013518
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
4931
4856
-
Thr
CGT
[ENA]
¡û
>W09106308
AAUL01000003
Gammaproteobacteria
Pseudomonas mendocina ymp [AAUL]
113103
113028
-
Thr
CGT
[ENA]
¡û
>C191170546
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
1709720
1709645
-
Thr
CGT
-
¡û
>W2010540341
JAAQXC010000004
Gammaproteobacteria
Pseudomonas sp. WS 5013 [JAAQXC]
487023
486950
-
Thr
CGT
[ENA]
¡û
>W2011416382
RFFK01000001
Gammaproteobacteria
Pseudomonas sp. AOB-7 [RFFK]
599950
599875
-
Thr
CGT
[ENA]
¡û
>W2011495414
RWYR01000001
Gammaproteobacteria
Pseudomonas sp. DSWY01 [RWYR]
327695
327620
-
Thr
CGT
[ENA]
¡û
>W2011837586
UGUP01000002
Gammaproteobacteria
Pseudomonas alcaligenes NCTC10367 [UGUP]
4741477
4741550
+
Thr
CGT
[ENA]
¡û
>W2012018335
VFNB01000001
Gammaproteobacteria
Pseudomonas sp. SLBN-2 [VFNB]
3069237
3069312
+
Thr
CGT
[ENA]
¡û
>W2110072107
BPMN01000016
Gammaproteobacteria
Pseudomonas alcaligenes KAM428 [BPMN]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072167
BPMO01000017
Gammaproteobacteria
Pseudomonas alcaligenes KAM429 [BPMO]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072222
BPMP01000017
Gammaproteobacteria
Pseudomonas alcaligenes KAM430 [BPMP]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072276
BPMQ01000016
Gammaproteobacteria
Pseudomonas alcaligenes KAM432 [BPMQ]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072331
BPMR01000017
Gammaproteobacteria
Pseudomonas alcaligenes KAM434 [BPMR]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072385
BPMS01000017
Gammaproteobacteria
Pseudomonas alcaligenes KAM435 [BPMS]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110072441
BPMT01000017
Gammaproteobacteria
Pseudomonas alcaligenes KAM436 [BPMT]
26451
26376
-
Thr
CGT
[ENA]
¡û
>W2110337953
JADMNJ010000024
Gammaproteobacteria
Pseudomonas mendocina GU [JADMNJ]
22275
22350
+
Thr
CGT
[ENA]
¡û
>C201023458
CP011508
Gammaproteobacteria
Pseudomonas mendocina NSYSU [CP011508]
3751865
3751790
-
Thr
CGT
-
¡û
>C211018932
AP024354
Gammaproteobacteria
Pseudomonas alcaligenes KAM426 [AP024354]
93157
93082
-
Thr
CGT
-
¡û
>C211234594
CP067013
Gammaproteobacteria
Pseudomonas balearica FDAARGOS_1013 [CP067013]
4274699
4274774
+
Thr
CGT
-
¡û
>C231010923
AP025273
Gammaproteobacteria
Pseudomonas alcaligenes MRCP2 [AP025273]
880957
881032
+
Thr
CGT
-
¡û
>W1510066486
CDCE01000016
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
85846
85771
-
Thr
CGT
[ENA]
¡û
>W1510067509
CDDB01000041
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
44393
44318
-
Thr
CGT
[ENA]
¡û
>W2110762298
RAXS01000001
Gammaproteobacteria
Pseudomonas balearica SAGV3-2SA2 [RAXS]
508644
508719
+
Thr
CGT
[ENA]
¡û
>C231403954
CP098606
Gammaproteobacteria
Pseudomonas mendocina MET-2 [CP098606]
4123340
4123265
-
Thr
CGT
-
¡û
>C231411999
CP099397
Gammaproteobacteria
Pseudomonas hydrolytica DSWY01 [CP099397]
3819925
3819850
-
Thr
CGT
-
¡û
>C231527582
CP110110
Gammaproteobacteria
Stutzerimonas balearica Z8 [CP110110]
2910855
2910780
-
Thr
CGT
-
¡û
>W2110781809
WIFQ01000003
Gammaproteobacteria
Pseudomonas balearica KOL14.W25.495.49 [WIFQ]
721578
721503
-
Thr
CGT
[ENA]
¡û
>W2110782077
WIFZ01000002
Gammaproteobacteria
Pseudomonas balearica KOL14.W.20.10 [WIFZ]
2971585
2971510
-
Thr
CGT
[ENA]
¡û
>W2110782253
WIGF01000003
Gammaproteobacteria
Pseudomonas balearica KOL14.W25.495.B5 [WIGF]
721556
721481
-
Thr
CGT
[ENA]
¡û
>C241102630
CP045858
Gammaproteobacteria
Stutzerimonas balearica EC28 [CP045858]
2138456
2138531
+
Thr
CGT
-
¡û
>W2130043795
QXMO01000022
Gammaproteobacteria
Pseudomonas balearica Z8 [QXMO]
21939
21864
-
Thr
CGT
[ENA]
¡û
>W1511429771
JUDR01000009
Gammaproteobacteria
Stutzerimonas stutzeri YC-YH1 [JUDR]
54114
54039
-
Thr
CGT
[ENA]
¡û
>C161077571
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
4047967
4047892
-
Thr
CGT
-
¡û
>W121112405
ALKM01000017
Gammaproteobacteria
Pseudomonas mendocina DLHK [ALKM]
412396
412321
-
Thr
CGT
[ENA]
¡û
>W1610794782
LONE01000045
Gammaproteobacteria
Stutzerimonas balearica [LONE]
17440
17365
-
Thr
CGT
[ENA]
¡û
>W1610842248
LPUO01000002
Gammaproteobacteria
Aeromonas schubertii [LPUO]
75925
76000
+
Thr
CGT
[ENA]
¡û
>W1710598262
FTNW01000003
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
240225
240300
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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