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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.534654 (22 seq.)
>W1711317468
MAXH01000218
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
9127
9052
-
Thr
GGT
[ENA]
¡û
>W1711317589
MAXK01000337
Thermodesulfobacteriota
Desulfobulbaceae bacterium S5133MH15 [MAXK]
9208
9133
-
Thr
GGT
[ENA]
¡û
>W1711317725
MAXQ01000257
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
11790
11865
+
Thr
GGT
[ENA]
¡û
>WENV183746988
PPCM01000083
[PPCM] marine sediment metagenome; marine sediment
74154
74079
-
Thr
GGT
[ENA]
¡û
>WENV170694315
LGVD01032929
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
516
591
+
Thr
GGT
[ENA]
¡û
>WENV170695273
LGVE01069059
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
407
332
-
Thr
GGT
[ENA]
¡û
>WENV170696543
LGVF01026547
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
11790
11865
+
Thr
GGT
[ENA]
¡û
>WENV170890026
MDTD01003902
[MDTD] marine metagenome; seawater
2827
2902
+
Thr
GGT
[ENA]
¡û
>W2011702049
SWCK01000002
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
244165
244090
-
Thr
GGT
[ENA]
¡û
>W2011702076
SWCK01000016
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
64783
64708
-
Thr
GGT
[ENA]
¡û
>W2011702140
SWCL01000005
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
289610
289685
+
Thr
GGT
[ENA]
¡û
>W2011702168
SWCL01000016
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
37982
37907
-
Thr
GGT
[ENA]
¡û
>W2011702174
SWCL01000019
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
60228
60303
+
Thr
GGT
[ENA]
¡û
>W2012331803
WIAA01000015
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [WIAA]
72594
72669
+
Thr
GGT
[ENA]
¡û
>W2110494759
JAFFQE010000005
Thermodesulfobacteriota
Desulfopila inferna DSM 19738 [JAFFQE]
291205
291130
-
Thr
GGT
[ENA]
¡û
>C241146399
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
507960
508035
+
Thr
GGT
-
¡û
>C241146405
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
1931621
1931696
+
Thr
GGT
-
¡û
>C241146465
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
634897
634822
-
Thr
GGT
-
¡û
>C241146502
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
5402272
5402197
-
Thr
GGT
-
¡û
>C241146506
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
5086756
5086681
-
Thr
GGT
-
¡û
>C241146545
CP050700
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [CP050700]
541629
541704
+
Thr
GGT
-
¡û
>W1710525186
FNJI01000014
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
57905
57980
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK