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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53519 (55 seq.)
>W1710786954
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4012066
4011979
-
Ser
CGA
[ENA]
¡û
>W1710860289
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
101187
101276
+
Ser
CGA
[ENA]
¡û
>W1710866981
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
197944
197855
-
Ser
CGA
[ENA]
¡û
>W1711183448
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
22390
22479
+
Ser
CGA
[ENA]
¡û
>WENV180023345
FTHV01000853
[FTHV] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¡û
>WENV180023397
FTHV01014477
[FTHV] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¡û
>WENV180023475
FTHY01000823
[FTHY] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¡û
>WENV180023526
FTHY01010874
[FTHY] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¡û
>WENV180024805
FTIJ01039196
[FTIJ] metagenome; soil
1739
1828
+
Ser
CGA
[ENA]
¡û
>WENV180033212
FTKF01054283
[FTKF] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¡û
>WENV180033686
FTKL01008099
[FTKL] metagenome; soil
2526
2615
+
Ser
CGA
[ENA]
¡û
>WENV180033879
FTKL01582703
[FTKL] metagenome; soil
52
141
+
Ser
CGA
[ENA]
¡û
>WENV180035050
FTKT01000481
[FTKT] metagenome; soil
19197
19286
+
Ser
CGA
[ENA]
¡û
>W141282681
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
428496
428585
+
Ser
CGA
[ENA]
¡û
>W141282750
JAIZ01000052
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
61582
61669
+
Ser
CGA
[ENA]
¡û
>WENV170565614
FJVZ01001089
[FJVZ] metagenome; soil
2435
2524
+
Ser
CGA
[ENA]
¡û
>C181116289
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4181539
4181628
+
Ser
CGA
-
¡û
>W141757003
JNXO01000393
Actinomycetota
Kitasatospora misakiensis [JNXO]
4718
4629
-
Ser
CGA
[ENA]
¡û
>W141761918
JOBB01000397
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
4090
4179
+
Ser
CGA
[ENA]
¡û
>W141764988
JODB01001915
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
2110
2199
+
Ser
CGA
[ENA]
¡û
>W141765997
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
424675
424586
-
Ser
CGA
[ENA]
¡û
>W141766926
JOEH01000009
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
198371
198284
-
Ser
CGA
[ENA]
¡û
>W141770034
JOGF01000477
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
5380
5291
-
Ser
CGA
[ENA]
¡û
>W141771115
JOGY01000282
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
370
459
+
Ser
CGA
[ENA]
¡û
>W141818499
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1711218
1711129
-
Ser
CGA
[ENA]
¡û
>W141819635
JQMJ01000003
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
677958
677871
-
Ser
CGA
[ENA]
¡û
>W141819799
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5126952
5126865
-
Ser
CGA
[ENA]
¡û
>W141819998
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
3021950
3021861
-
Ser
CGA
[ENA]
¡û
>W1810394699
PYBW01000039
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
104540
104451
-
Ser
CGA
[ENA]
¡û
>W2010705665
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
4165889
4165800
-
Ser
CGA
[ENA]
¡û
>W2011434082
RJKW01000001
Actinomycetota
Streptomyces sp. 844.5 [RJKW]
4150325
4150412
+
Ser
CGA
[ENA]
¡û
>W2011655056
SOBN01000001
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
4340480
4340393
-
Ser
CGA
[ENA]
¡û
>W2110039457
BMSD01000052
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
2765
2854
+
Ser
CGA
[ENA]
¡û
>W2110053255
BNBO01000011
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
153429
153340
-
Ser
CGA
[ENA]
¡û
>W2110140342
JAAFYY010000001
Actinomycetota
Streptacidiphilus sp. 4-A2 [JAAFYY]
6442209
6442296
+
Ser
CGA
[ENA]
¡û
>W2110371198
JADPRT010000009
Actinomycetota
Streptacidiphilus fuscans NEAU-YB345 [JADPRT]
225664
225751
+
Ser
CGA
[ENA]
¡û
>C201213352
CP048289
Actinomycetota
Streptacidiphilus sp. P02-A3a [CP048289]
225783
225696
-
Ser
CGA
-
¡û
>C201215081
CP048405
Actinomycetota
Streptacidiphilus sp. PB12-B1b [CP048405]
179437
179350
-
Ser
CGA
-
¡û
>W1510013952
BBPL01000008
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
193269
193356
+
Ser
CGA
[ENA]
¡û
>W1510014035
BBPM01000043
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
24361
24274
-
Ser
CGA
[ENA]
¡û
>W1510014108
BBPN01000032
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
106133
106046
-
Ser
CGA
[ENA]
¡û
>W1510014158
BBPO01000033
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
35376
35289
-
Ser
CGA
[ENA]
¡û
>C241202530
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
4370554
4370643
+
Ser
CGA
-
¡û
>C241209647
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
4168260
4168349
+
Ser
CGA
-
¡û
>C241209713
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4402927
4403016
+
Ser
CGA
-
¡û
>C241210215
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5269343
5269254
-
Ser
CGA
-
¡û
>C241210254
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
4221046
4221135
+
Ser
CGA
-
¡û
>C241211702
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5209971
5209882
-
Ser
CGA
-
¡û
>C241211772
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
5155146
5155059
-
Ser
CGA
-
¡û
>W1511555624
JZWY01000090
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
47476
47563
+
Ser
CGA
[ENA]
¡û
>W1511696784
LGDO01000093
Actinomycetota
Streptomyces sp. XY431 [LGDO]
14132
14043
-
Ser
CGA
[ENA]
¡û
>W1610650809
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4012066
4011979
-
Ser
CGA
[ENA]
¡û
>W1610722635
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
101187
101276
+
Ser
CGA
[ENA]
¡û
>W1610729327
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
197944
197855
-
Ser
CGA
[ENA]
¡û
>W1710544665
FOAZ01000003
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
59332
59419
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK