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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53592 (34 seq.)
>W1711499564
MKQK01000074
Bacillota
Paenibacillus odorifer [MKQK]
37494
37406
-
Ser
TGA
[ENA]
¡û
>W1711499615
MKQL01000026
Bacillota
Paenibacillus odorifer [MKQL]
6509
6597
+
Ser
TGA
[ENA]
¡û
>W1711632850
MPTC01000038
Bacillota
Paenibacillus odorifer [MPTC]
37485
37397
-
Ser
TGA
[ENA]
¡û
>W1711633063
MPTF01000031
Bacillota
Paenibacillus odorifer [MPTF]
37443
37355
-
Ser
TGA
[ENA]
¡û
>W1711633176
MPTH01000046
Bacillota
Paenibacillus odorifer [MPTH]
45046
44958
-
Ser
TGA
[ENA]
¡û
>W1711633239
MPTI01000036
Bacillota
Paenibacillus odorifer [MPTI]
6497
6585
+
Ser
TGA
[ENA]
¡û
>W1711633369
MPTK01000039
Bacillota
Paenibacillus odorifer [MPTK]
6498
6586
+
Ser
TGA
[ENA]
¡û
>W1711633429
MPTL01000046
Bacillota
Paenibacillus odorifer [MPTL]
6478
6566
+
Ser
TGA
[ENA]
¡û
>W1711633823
MPTR01000056
Bacillota
Paenibacillus odorifer [MPTR]
12303
12215
-
Ser
TGA
[ENA]
¡û
>W1711636672
MPVO01000017
Bacillota
Paenibacillus odorifer [MPVO]
6573
6661
+
Ser
TGA
[ENA]
¡û
>W1711636697
MPVP01000240
Bacillota
Paenibacillus odorifer [MPVP]
4240
4152
-
Ser
TGA
[ENA]
¡û
>W1711677034
MRTF01000019
Bacillota
Paenibacillus lautus [MRTF]
6689
6777
+
Ser
TGA
[ENA]
¡û
>W1711678143
MRTY01000041
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
40491
40403
-
Ser
TGA
[ENA]
¡û
>W1712108646
NJDE01000032
Bacillota
Saccharibacillus sp. O23 [NJDE]
26462
26550
+
Ser
TGA
[ENA]
¡û
>W141072312
ASPS01000005
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
6507
6595
+
Ser
TGA
[ENA]
¡û
>W141072529
ASPV01000019
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
37461
37373
-
Ser
TGA
[ENA]
¡û
>W141072684
ASPX01000024
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
6459
6547
+
Ser
TGA
[ENA]
¡û
>W141073609
ASSG01000374
Bacillota
Paenibacillus graminis RSA19 [ASSG]
6820
6908
+
Ser
TGA
[ENA]
¡û
>W141263422
CCDG010000058
Bacillota
Paenibacillus camerounensis G4 [CCDG]
40636
40548
-
Ser
TGA
[ENA]
¡û
>WENV183720088
PDWJ01026180
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
304
392
+
Ser
TGA
[ENA]
¢þ
>W1911810912
QZCF01000007
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
8735
8823
+
Ser
TGA
[ENA]
¡û
>C151005540
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
90037
90125
+
Ser
TGA
[Ensembl]
¡û
>C151046370
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
91026
91114
+
Ser
TGA
[Ensembl]
¡û
>C151047509
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
93007
93095
+
Ser
TGA
[Ensembl]
¡û
>C151047594
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
103259
103347
+
Ser
TGA
[Ensembl]
¡û
>C151047938
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
91287
91375
+
Ser
TGA
[Ensembl]
¡û
>C151104365
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
91028
91116
+
Ser
TGA
[Ensembl]
¡û
>W1510562442
CTED01000598
Bacillota
Paenibacillus ihuae GD6 [CTED]
16555
16467
-
Ser
TGA
[ENA]
¡û
>W1511352085
JRNV01000062
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
20290
20202
-
Ser
TGA
[ENA]
¡û
>W1511430178
JUEI01000053
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
6455
6543
+
Ser
TGA
[ENA]
¡û
>W1610633920
LIRA01001774
Bacillota
Paenibacillus riograndensis [LIRA]
6319
6407
+
Ser
TGA
[ENA]
¡û
>W1610633929
LIRB01000092
Bacillota
Paenibacillus riograndensis [LIRB]
6986
7074
+
Ser
TGA
[ENA]
¡û
>W1710768352
LIRA01001774
Bacillota
Paenibacillus riograndensis [LIRA]
6319
6407
+
Ser
TGA
[ENA]
¡û
>W1710768361
LIRB01000092
Bacillota
Paenibacillus riograndensis [LIRB]
6986
7074
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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