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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53637 (52 seq.)
>W1711006314
LQOF01000586
Bacillota
Streptococcus gallolyticus [LQOF]
256
171
-
Leu
TAA
[ENA]
¡û
>W1711019352
LQXV01000578
Bacillota
Streptococcus gallolyticus [LQXV]
93
178
+
Leu
TAA
[ENA]
¡û
>W131087084
AOCE01000265
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AOCE]
90
177
+
Leu
TAA
[ENA]
¡û
>W131231565
AUIN01000011
Bacillota
Streptococcus devriesei DSM 19639 [AUIN]
359722
359637
-
Leu
TAA
[ENA]
¡û
>WENV180120354
OASL01071208
[OASL] human gut metagenome; ENVO:feces
87
2
-
Leu
TAA
[ENA]
¢þ
>WENV180239914
OBDB01080350
[OBDB] human gut metagenome; human gut
242
157
-
Leu
TAA
[ENA]
¢þ
>WENV180403090
OBRR01009451
[OBRR] human gut metagenome; ENVO:feces
302
217
-
Leu
TAA
[ENA]
¢þ
>WENV180415780
OBVF01007327
[OBVF] human gut metagenome; faeces
237
152
-
Leu
TAA
[ENA]
¢þ
>WENV181338859
OFMF01031552
[OFMF] human gut metagenome; human gut
577
662
+
Leu
TAA
[ENA]
¢þ
>W08006806
ABJK02000013
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
66
151
+
Leu
TAA
[ENA]
¡û
>W08006832
ABJK02000017
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
140794
140709
-
Leu
TAA
[ENA]
¡û
>WENV181527403
OGHK01001554
[OGHK] metagenome; Human gut stool
580
665
+
Leu
TAA
[ENA]
¢þ
>WENV181557911
OGIW01000537
[OGIW] metagenome; Human gut stool
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV181564742
OGJH01023629
[OGJH] metagenome; Human gut stool
705
620
-
Leu
TAA
[ENA]
¢þ
>WENV181568721
OGJK01005580
[OGJK] metagenome; Human gut stool
6423
6508
+
Leu
TAA
[ENA]
¢þ
>WENV181580303
OGJZ01029659
[OGJZ] metagenome; Human gut stool
78
163
+
Leu
TAA
[ENA]
¢þ
>WENV181998314
OHAU01050824
[OHAU] human gut metagenome; faeces
257
172
-
Leu
TAA
[ENA]
¢þ
>WENV182149164
OHLG01001135
[OHLG] human gut metagenome; feces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182230057
OHRK01000018
[OHRK] human gut metagenome; feces
27159
27074
-
Leu
TAA
[ENA]
¢þ
>WENV182409720
OIFJ01000150
[OIFJ] human gut metagenome; stool
913
998
+
Leu
TAA
[ENA]
¢þ
>W141243250
CAJJ020000041
Bacillota
Anaerococcus pacaensis 9403502 [CAJJ]
9415
9327
-
Leu
TAA
[ENA]
¡û
>WENV182496572
OITG01001812
[OITG] human gut metagenome; human gut
304
219
-
Leu
TAA
[ENA]
¢þ
>WENV182695796
OJOJ01037191
[OJOJ] human gut metagenome; human gut
519
604
+
Leu
TAA
[ENA]
¢þ
>WENV182814543
OJYK01000383
[OJYK] human gut metagenome; human gut
13654
13569
-
Leu
TAA
[ENA]
¢þ
>WENV182854690
OKMW01000192
[OKMW] human gut metagenome; human gut
28985
28900
-
Leu
TAA
[ENA]
¢þ
>WENV182961761
OKWL01000311
[OKWL] human gut metagenome; stool
30414
30329
-
Leu
TAA
[ENA]
¢þ
>WENV183003634
OLCT01000843
[OLCT] human gut metagenome; human gut
4384
4469
+
Leu
TAA
[ENA]
¢þ
>WENV183009263
OLDP01000810
[OLDP] human gut metagenome; human gut
1201
1116
-
Leu
TAA
[ENA]
¢þ
>C181000173
AP014612
Bacillota
Streptococcus troglodytae TKU 31 [AP014612]
23168
23253
+
Leu
TAA
-
¡û
>C181000200
AP014612
Bacillota
Streptococcus troglodytae TKU 31 [AP014612]
392039
392124
+
Leu
TAA
-
¡û
>C181180470
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
24694
24781
+
Leu
TAA
-
¡û
>C181180513
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
1807982
1807895
-
Leu
TAA
-
¡û
>C191203823
LR134282
Bacillota
Streptococcus equinus NCTC8140 [LR134282]
21238
21323
+
Leu
TAA
-
¡û
>C191203833
LR134282
Bacillota
Streptococcus equinus NCTC8140 [LR134282]
27067
27152
+
Leu
TAA
-
¡û
>C191204483
LR134292
Bacillota
Streptococcus equinus NCTC10389 [LR134292]
1362288
1362373
+
Leu
TAA
-
¡û
>C141001311
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
284590
284675
+
Leu
TAA
[Ensembl]
¡û
>W1810188089
PKIB01000015
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
30481
30396
-
Leu
TAA
[ENA]
¡û
>W1810188093
PKIB01000015
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
29453
29368
-
Leu
TAA
[ENA]
¡û
>W1810823955
QSHE01000050
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
568
483
-
Leu
TAA
[ENA]
¡û
>W11139888
AEKN01000011
Bacillota
Streptococcus downei F0415 [AEKN]
598
511
-
Leu
TAA
[ENA]
¡û
>W11139897
AEKN01000017
Bacillota
Streptococcus downei F0415 [AEKN]
31628
31541
-
Leu
TAA
[ENA]
¡û
>W11179443
AGGM01000263
Bacillota
Streptococcus sobrinus TCI-80 [AGGM]
1719
1632
-
Leu
TAA
[ENA]
¡û
>W11179593
AGGR01001203
Bacillota
Streptococcus sobrinus TCI-121 [AGGR]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179801
AGGY01000195
Bacillota
Streptococcus sobrinus TCI-355 [AGGY]
60
147
+
Leu
TAA
[ENA]
¡û
>C121010304
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
21884
21969
+
Leu
TAA
[Ensembl]
¡û
>C121010340
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
325974
326059
+
Leu
TAA
[Ensembl]
¡û
>C121017960
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
24310
24395
+
Leu
TAA
[Ensembl]
¡û
>C121017978
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
79790
79875
+
Leu
TAA
[Ensembl]
¡û
>C161078083
CP014835
Bacillota
Streptococcus halotolerans HTS9 [CP014835]
1522573
1522488
-
Leu
TAA
-
¡û
>C161078114
CP014835
Bacillota
Streptococcus halotolerans HTS9 [CP014835]
1269591
1269506
-
Leu
TAA
-
¡û
>W1610856964
LQOF01000586
Bacillota
Streptococcus gallolyticus [LQOF]
256
171
-
Leu
TAA
[ENA]
¡û
>W1610867640
LQXV01000578
Bacillota
Streptococcus gallolyticus [LQXV]
93
178
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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