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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.537799 (7 seq.)
>W1711464449
MJKD01000004
Campylobacterota
Campylobacter sp. P0088 [MJKD]
176474
176399
-
Trp
CCA
[ENA]
¡û
>WENV170658497
JTFP01124295
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
222
297
+
Trp
CCA
[ENA]
¢þ
>C191153578
CP037746
Campylobacterota
Campylobacter volucris 2014D-0083 [CP037746]
1150525
1150450
-
Trp
CCA
-
¡û
>C191211225
LR134471
Campylobacterota
Campylobacter insulaenigrae NCTC12927 [LR134471]
391323
391398
+
Trp
CCA
-
¡û
>C151034010
CP007766
Campylobacterota
Campylobacter peloridis LMG 23910 [CP007766]
453207
453282
+
Trp
CCA
[Ensembl]
¡û
>C151034102
CP007770
Campylobacterota
Campylobacter insulaenigrae NCTC 12927 [CP007770]
391324
391399
+
Trp
CCA
[Ensembl]
¡û
>C151034279
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
399227
399302
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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