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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538506 (11 seq.)
>W131208405
ATHJ01000011
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
140168
140093
-
Met
CAT
[ENA]
¡û
>w022486
AAWN01000052
Thermodesulfobacteriota
Desulfosudis oleivorans oleovorans Hxd3 [AAWN]
16328
16251
-
Met
CAT
[ENA]
¡û
>C171038075
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
2688948
2688873
-
Met
CAT
-
¡û
>C171100881
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
2689183
2689108
-
Met
CAT
-
¡û
>WENV180345668
OBLN01002225
[OBLN] sediment metagenome; sediment
1863
1935
+
Ile2
CAT
[ENA]
¡û
>C08004149
CP000859
Thermodesulfobacteriota
Desulfosudis oleivorans Hxd3 [CP000859]
2610264
2610191
-
Met
CAT
[Ensembl]
¡û
>WENV170006640
AMWB02039410
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1920
1845
-
Met
CAT
[ENA]
¡û
>WENV170006828
AMWB02055474
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1918
1843
-
Met
CAT
[ENA]
¡û
>C241004473
AP021876
Thermodesulfobacteriota
Desulfosarcina ovata subsp. sediminis 28bB2T [AP021876]
778667
778740
+
Ile2
CAT
-
¡û
>C241004522
AP021879
Thermodesulfobacteriota
Desulfosarcina ovata subsp. ovata oXyS1 [AP021879]
714829
714902
+
Ile2
CAT
-
¡û
>W1710600542
FUWN01000008
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
139888
139813
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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