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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53863 (78 seq.)
>W1710859970
LMCM01000010
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
246574
246487
-
Ser
GGA
[ENA]
¡û
>W1710865187
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2089682
2089769
+
Ser
GGA
[ENA]
¡û
>W1710879988
LMSA01000002
Actinomycetota
Knoellia sp. Soil729 [LMSA]
789790
789703
-
Ser
GGA
[ENA]
¡û
>W1710880968
LMSS01000002
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
450823
450736
-
Ser
GGA
[ENA]
¡û
>W1710881019
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
4222052
4222139
+
Ser
GGA
[ENA]
¡û
>W1711048111
LRPJ01000009
Actinomycetota
Winkia neuii [LRPJ]
59283
59368
+
Ser
GGA
[ENA]
¡û
>W1711092800
LTEK01000065
Actinomycetota
Actinomyces sp. HMSC064C12 [LTEK]
86
1
-
Ser
GGA
[ENA]
¡û
>W1711093314
LTEW01000113
Actinomycetota
Actinomyces sp. HMSC072A03 [LTEW]
26432
26517
+
Ser
GGA
[ENA]
¡û
>W1711186469
LWOG01000006
Actinomycetota
Actinomyces sp. HMSC06A08 [LWOG]
12587
12502
-
Ser
GGA
[ENA]
¡û
>W131217668
ATXA01000010
Actinomycetota
Frankia sp. Iso899 [ATXA]
123684
123771
+
Ser
GGA
[ENA]
¡û
>W1711312292
MAST01000001
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
43192
43105
-
Ser
GGA
[ENA]
¡û
>WENV180030542
FTJM01379583
[FTJM] metagenome; soil
607
520
-
Ser
GGA
[ENA]
¡û
>WENV180312783
OBJZ01000083
[OBJZ] human gut metagenome; fecal sample
126
41
-
Ser
GGA
[ENA]
¡û
>WENV181307881
OFIS01000012
[OFIS] sludge metagenome; sludge
211684
211599
-
Ser
GGA
[ENA]
¡û
>WENV181308301
OFIS01003073
[OFIS] sludge metagenome; sludge
323
238
-
Ser
GGA
[ENA]
¡û
>WENV181401766
OFTX01005555
[OFTX] sludge metagenome; sludge
1740
1825
+
Ser
GGA
[ENA]
¡û
>WENV170954671
MJUI01019857
[MJUI] soil metagenome; viral particles from soil sample MG3
209
296
+
Ser
GGA
[ENA]
¡û
>W141770712
JOGR01000001
Actinomycetota
Glycomyces sp. NRRL B-16210 [JOGR]
255027
254940
-
Ser
GGA
[ENA]
¡û
>W1810089835
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
1751582
1751669
+
Ser
GGA
[ENA]
¡û
>W1810191336
PKKN01000006
Actinomycetota
Winkia neuii UMB0125 [PKKN]
63961
63876
-
Ser
GGA
[ENA]
¡û
>W1810191367
PKKO01000003
Actinomycetota
Winkia neuii UMB0402 [PKKO]
164438
164523
+
Ser
GGA
[ENA]
¡û
>W1810296255
PTJD01000012
Actinomycetota
Kineococcus xinjiangensis DSM 22857 [PTJD]
96388
96476
+
Ser
GGA
[ENA]
¡û
>W1810364604
PVTJ01000002
Actinomycetota
Glycomyces artemisiae CGMCC 4.7067 [PVTJ]
650499
650412
-
Ser
GGA
[ENA]
¡û
>W1810588377
QFRW01000280
Actinomycetota
Glycomyces dulcitolivorans SJ-25 [QFRW]
5552
5465
-
Ser
GGA
[ENA]
¡û
>C151077133
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
4982070
4981983
-
Ser
GGA
-
¡û
>W2010106994
BKBA01000008
Actinomycetota
Knoellia locipacati NBRC 109775 [BKBA]
117627
117712
+
Ser
GGA
[ENA]
¡û
>W2010472424
JAAHFJ010000001
Actinomycetota
Mumia sp. ZJ1417 [JAAHFJ]
846991
847078
+
Ser
GGA
[ENA]
¡û
>W2010472482
JAAHFK010000001
Actinomycetota
Mumia sp. ZJ430 [JAAHFK]
489839
489752
-
Ser
GGA
[ENA]
¡û
>W2010592327
JABENB010000001
Actinomycetota
Flexivirga sp. ID2601S [JABENB]
486965
487052
+
Ser
GGA
[ENA]
¡û
>W2010593076
JABEPQ010000003
Actinomycetota
Knoellia sp. DB2414S [JABEPQ]
181947
182034
+
Ser
GGA
[ENA]
¡û
>W2010668516
JACBZP010000001
Actinomycetota
Spelaeicoccus albus DSM 26341 [JACBZP]
69752
69839
+
Ser
GGA
[ENA]
¡û
>W2010669058
JACCAB010000001
Actinomycetota
Phycicoccus badiiscoriae DSM 23987 [JACCAB]
1203499
1203586
+
Ser
GGA
[ENA]
¡û
>W2011408068
RCZM01000005
Actinomycetota
Phycicoccus bigeumensis S9.3A [RCZM]
383955
384042
+
Ser
GGA
[ENA]
¡û
>W2011408376
RDBF01000001
Actinomycetota
Aeromicrobium sp. 9W16Y-2 [RDBF]
432043
432128
+
Ser
GGA
[ENA]
¡û
>W2011477760
RQJX01000004
Actinomycetota
Aeromicrobium camelliae YS17T [RQJX]
82223
82138
-
Ser
GGA
[ENA]
¡û
>W2011490019
RSEB01000003
Actinomycetota
Glycomyces sp. YIM 121974 [RSEB]
343133
343220
+
Ser
GGA
[ENA]
¡û
>W2011655538
SOBV01000001
Actinomycetota
Glycomyces sp. MMG10089 [SOBV]
917103
917016
-
Ser
GGA
[ENA]
¡û
>W2011695425
STGX01000004
Actinomycetota
Glycomyces paridis CPCC 204357 [STGX]
4126
4213
+
Ser
GGA
[ENA]
¡û
>W2011978916
VCQV01000033
Actinomycetota
Dermacoccaceae bacterium C5-26 [VCQV]
44154
44067
-
Ser
GGA
[ENA]
¡û
>W2011982228
VDFR01000120
Actinomycetota
Mumia sp. Z527 [VDFR]
5593
5680
+
Ser
GGA
[ENA]
¡û
>W2012017521
VFMN01000001
Actinomycetota
Lapillicoccus jejuensis DSM 18607 [VFMN]
1106762
1106849
+
Ser
GGA
[ENA]
¡û
>W2012047304
VIVQ01000002
Actinomycetota
Rudaeicoccus suwonensis DSM 19560 [VIVQ]
169479
169566
+
Ser
GGA
[ENA]
¡û
>W2012103387
VOHR01000021
Actinomycetota
Ornithinicoccus sp. YJ01 [VOHR]
25987
25900
-
Ser
GGA
[ENA]
¡û
>W2012197409
VWPY01000019
Actinomycetota
Kineosporiaceae bacterium B12 [VWPY]
65082
64997
-
Ser
GGA
[ENA]
¡û
>W2012332038
WIAO01000042
Actinomycetota
Glycomyces albidus NEAU-7082 [WIAO]
19069
19156
+
Ser
GGA
[ENA]
¡û
>W2012356815
WJYO01000001
Actinomycetota
Mumia xiangluensis NEAU-KD1 T [WJYO]
899301
899214
-
Ser
GGA
[ENA]
¡û
>W2110020868
BMEA01000001
Actinomycetota
Knoellia flava CGMCC 1.10749 [BMEA]
1543682
1543595
-
Ser
GGA
[ENA]
¡û
>W2110025098
BMHI01000002
Actinomycetota
Flexivirga endophytica CGMCC 1.15085 [BMHI]
424648
424561
-
Ser
GGA
[ENA]
¡û
>W2110050379
BMZJ01000005
Actinomycetota
Flexivirga endophytica KCTC 39536 [BMZJ]
7227
7140
-
Ser
GGA
[ENA]
¡û
>W2110109288
CAJHCD010000003
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJHCD]
112571
112656
+
Ser
GGA
[ENA]
¡û
>W2110444612
JAERMK010000010
Actinomycetota
Glycomyces sp. YM15 [JAERMK]
187302
187215
-
Ser
GGA
[ENA]
¡û
>W2110656870
JAHWCI010000008
Actinomycetota
Mumia sp. zg.B17 [JAHWCI]
580115
580202
+
Ser
GGA
[ENA]
¡û
>W2110656912
JAHWCJ010000002
Actinomycetota
Mumia sp. zg.B21 [JAHWCJ]
474114
474027
-
Ser
GGA
[ENA]
¡û
>W2110656947
JAHWCK010000001
Actinomycetota
Mumia sp. zg.B53 [JAHWCK]
1678580
1678493
-
Ser
GGA
[ENA]
¡û
>C211384096
CP081186
Actinomycetota
Glycomyces sp. TRM65418 [CP081186]
2338866
2338779
-
Ser
GGA
-
¡û
>C231364421
CP095846
Actinomycetota
Nocardioidaceae bacterium SCSIO 66511 [CP095846]
372313
372226
-
Ser
GGA
-
¡û
>C241105741
CP046121
Actinomycetota
Nostocoides sp. HKS02 [CP046121]
2472739
2472826
+
Ser
GGA
-
¡û
>W2130008214
CAJHCF010000029
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJHCF]
304
219
-
Ser
GGA
[ENA]
¡û
>C241180015
CP059901
Actinomycetota
Mumia sp. ZJ1417 [CP059901]
280202
280115
-
Ser
GGA
-
¡û
>W2310021354
BSDT01000001
Actinomycetota
Glycomyces algeriensis LLR39Z86 [BSDT]
576784
576871
+
Ser
GGA
[ENA]
¡û
>W1511398105
JTDJ01000078
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
20145
20058
-
Ser
GGA
[ENA]
¡û
>W1511568096
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
139118
139205
+
Ser
GGA
[ENA]
¡û
>W1610027061
AVPI01000002
Actinomycetota
Knoellia flava TL1 [AVPI]
18176
18089
-
Ser
GGA
[ENA]
¡û
>W1610027135
AVPJ01000020
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
42959
42872
-
Ser
GGA
[ENA]
¡û
>W1610027160
AVPK01000003
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
25413
25500
+
Ser
GGA
[ENA]
¡û
>W1610027216
AVPL01000035
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
29120
29207
+
Ser
GGA
[ENA]
¡û
>W1610722316
LMCM01000010
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
246574
246487
-
Ser
GGA
[ENA]
¡û
>W1610727533
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
2089682
2089769
+
Ser
GGA
[ENA]
¡û
>W1610742334
LMSA01000002
Actinomycetota
Knoellia sp. Soil729 [LMSA]
789790
789703
-
Ser
GGA
[ENA]
¡û
>W1610742415
LMSC01000006
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
321148
321061
-
Ser
GGA
[ENA]
¡û
>W1610743314
LMSS01000002
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
450823
450736
-
Ser
GGA
[ENA]
¡û
>W1610743365
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
4222052
4222139
+
Ser
GGA
[ENA]
¡û
>W1610889240
LRPJ01000009
Actinomycetota
Winkia neuii [LRPJ]
59283
59368
+
Ser
GGA
[ENA]
¡û
>W1710023226
AVPI01000002
Actinomycetota
Knoellia flava TL1 [AVPI]
18176
18089
-
Ser
GGA
[ENA]
¡û
>W1710023300
AVPJ01000020
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
42959
42872
-
Ser
GGA
[ENA]
¡û
>W1710023325
AVPK01000003
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
25413
25500
+
Ser
GGA
[ENA]
¡û
>W1710023381
AVPL01000035
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
29120
29207
+
Ser
GGA
[ENA]
¡û
>W1710513414
FNAD01000004
Actinomycetota
Glycomyces harbinensis [FNAD]
289851
289764
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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