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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53865 (86 seq.)
>W1711117583
LUDG01000006
Bacteroidota
Riemerella anatipestifer [LUDG]
47208
47121
-
Ser
TGA
[ENA]
¡û
>W1711117619
LUDH01000005
Bacteroidota
Riemerella anatipestifer [LUDH]
68070
68157
+
Ser
TGA
[ENA]
¡û
>W1711117623
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
272349
272436
+
Ser
TGA
[ENA]
¡û
>W1711117881
LUDO01000005
Bacteroidota
Riemerella anatipestifer [LUDO]
70439
70526
+
Ser
TGA
[ENA]
¡û
>W1711118133
LUDV01000006
Bacteroidota
Riemerella anatipestifer [LUDV]
45853
45766
-
Ser
TGA
[ENA]
¡û
>W1711386332
MEFE01000103
Bacteroidota
Sphingobacteriales bacterium SCN 48-20 [MEFE]
7524
7435
-
Ser
TGA
[ENA]
¡û
>W1711503801
MKTY01000016
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
49583
49498
-
Ser
TGA
[ENA]
¡û
>W1711503902
MKUA01000028
Bacteroidota
Sphingobacteriales bacterium 48-107 [MKUA]
148369
148458
+
Ser
TGA
[ENA]
¡û
>W131059224
ANGF01000030
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
5336
5249
-
Ser
TGA
[ENA]
¡û
>WENV180722579
ODGM01003186
[ODGM] human metagenome; G_DNA_Palatine Tonsils
115
200
+
Ser
TGA
[ENA]
¡û
>WENV180736141
ODHB01006157
[ODHB] human metagenome; G_DNA_Supragingival plaque
2020
2105
+
Ser
TGA
[ENA]
¡û
>WENV180738579
ODHD01000117
[ODHD] human metagenome; G_DNA_Supragingival plaque
27772
27687
-
Ser
TGA
[ENA]
¡û
>WENV180769105
ODIG01034052
[ODIG] human metagenome; G_DNA_Tongue dorsum
1004
919
-
Ser
TGA
[ENA]
¡û
>WENV180777725
ODIL01065273
[ODIL] human metagenome; G_DNA_Supragingival plaque
234
149
-
Ser
TGA
[ENA]
¡û
>WENV180793634
ODIW01046321
[ODIW] human metagenome; G_DNA_Tongue dorsum
326
241
-
Ser
TGA
[ENA]
¡û
>WENV180813336
ODJO01000378
[ODJO] human metagenome; G_DNA_Supragingival plaque
32456
32541
+
Ser
TGA
[ENA]
¡û
>WENV180835927
ODKE01021669
[ODKE] human metagenome; G_DNA_Supragingival plaque
831
916
+
Ser
TGA
[ENA]
¡û
>WENV180852528
ODKW01001680
[ODKW] human metagenome; G_DNA_Tongue dorsum
379
294
-
Ser
TGA
[ENA]
¡û
>WENV180916668
ODTD01000446
[ODTD] human metagenome; G_DNA_Tongue dorsum
21727
21812
+
Ser
TGA
[ENA]
¡û
>WENV180927517
ODTM01000969
[ODTM] human metagenome; G_DNA_Supragingival plaque
8016
8101
+
Ser
TGA
[ENA]
¡û
>WENV180927937
ODTM01007594
[ODTM] human metagenome; G_DNA_Supragingival plaque
416
331
-
Ser
TGA
[ENA]
¡û
>WENV180943991
ODUC01005611
[ODUC] human metagenome; G_DNA_Supragingival plaque
5466
5551
+
Ser
TGA
[ENA]
¡û
>WENV180958723
ODUL01026766
[ODUL] human metagenome; G_DNA_Supragingival plaque
393
308
-
Ser
TGA
[ENA]
¡û
>WENV180973002
ODUW01000808
[ODUW] human metagenome; G_DNA_Supragingival plaque
2001
1916
-
Ser
TGA
[ENA]
¡û
>WENV180976936
ODUY01354485
[ODUY] human metagenome; G_DNA_Supragingival plaque
72
157
+
Ser
TGA
[ENA]
¡û
>WENV180984095
ODVF01107885
[ODVF] human metagenome; G_DNA_Supragingival plaque
234
149
-
Ser
TGA
[ENA]
¡û
>WENV181003473
ODVX01014136
[ODVX] human metagenome; G_DNA_Supragingival plaque
1981
1896
-
Ser
TGA
[ENA]
¡û
>WENV181007704
ODWE01000486
[ODWE] human metagenome; G_DNA_Supragingival plaque
1070
985
-
Ser
TGA
[ENA]
¡û
>WENV181008113
ODWE01002027
[ODWE] human metagenome; G_DNA_Supragingival plaque
3163
3248
+
Ser
TGA
[ENA]
¡û
>WENV181009451
ODWE01073527
[ODWE] human metagenome; G_DNA_Supragingival plaque
416
331
-
Ser
TGA
[ENA]
¡û
>WENV181017449
ODWR01079933
[ODWR] human metagenome; G_DNA_Tongue dorsum
200
115
-
Ser
TGA
[ENA]
¡û
>WENV181041701
ODXS01031162
[ODXS] human metagenome; G_DNA_Tongue dorsum
621
706
+
Ser
TGA
[ENA]
¡û
>WENV181086841
OEAY01004237
[OEAY] human metagenome; G_DNA_Tongue dorsum
3927
4012
+
Ser
TGA
[ENA]
¡û
>WENV181091969
OEBC01159797
[OEBC] human metagenome; G_DNA_Supragingival plaque
276
361
+
Ser
TGA
[ENA]
¡û
>WENV181097948
OECA01048088
[OECA] human metagenome; G_DNA_Tongue dorsum
441
356
-
Ser
TGA
[ENA]
¡û
>WENV181108054
OEEI01071634
[OEEI] human metagenome; G_DNA_Supragingival plaque
178
93
-
Ser
TGA
[ENA]
¡û
>WENV181115033
OEEO01015047
[OEEO] human metagenome; G_DNA_Supragingival plaque
910
825
-
Ser
TGA
[ENA]
¡û
>WENV181152680
OEIA01003936
[OEIA] human metagenome; G_DNA_Supragingival plaque
291
206
-
Ser
TGA
[ENA]
¡û
>WENV181156509
OEIE01024227
[OEIE] human metagenome; G_DNA_Supragingival plaque
289
204
-
Ser
TGA
[ENA]
¡û
>WENV181158273
OEIH01000157
[OEIH] human metagenome; G_DNA_Supragingival plaque
12277
12192
-
Ser
TGA
[ENA]
¡û
>WENV181159968
OEIK01001016
[OEIK] human metagenome; G_DNA_Supragingival plaque
1292
1207
-
Ser
TGA
[ENA]
¡û
>WENV181168053
OEIU01142038
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
545
458
-
Ser
TGA
[ENA]
¡û
>WENV181168637
OEIU01582378
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
102
16
-
Ser
TGA
[ENA]
¡û
>WENV181402321
OFTY01000604
[OFTY] sludge metagenome; sludge
1870
1785
-
Ser
TGA
[ENA]
¡û
>WENV181843227
OGVU01003987
[OGVU] freshwater metagenome; freshwater
143
228
+
Ser
TGA
[ENA]
¡û
>WENV183729410
PJTQ01035889
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
295
208
-
Ser
TGA
[ENA]
¡û
>WENV183744765
PJUL01000200
[PJUL] feces metagenome; Chicken feces enriched on filter paper
27028
26943
-
Ser
TGA
[ENA]
¡û
>WENV170010768
APMI01028299
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9314
9401
+
Ser
TGA
[ENA]
¡û
>WENV170994489
MWWE01001318
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1726
1639
-
Ser
TGA
[ENA]
¡û
>C151025778
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
2144520
2144607
+
Ser
TGA
[Ensembl]
¡û
>W2010213336
CABHMS010000004
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
577560
577645
+
Ser
TGA
[ENA]
¡û
>W2010213392
CABHMT010000004
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
1910221
1910306
+
Ser
TGA
[ENA]
¡û
>W2011326560
QXHR01000010
Bacteroidota
Riemerella anatipestifer CCUG25005 [QXHR]
39725
39640
-
Ser
TGA
[ENA]
¡û
>W2011326639
QXHT01000065
Bacteroidota
Riemerella anatipestifer CCUG25010 [QXHT]
4653
4568
-
Ser
TGA
[ENA]
¡û
>W2011326665
QXHU01000001
Bacteroidota
Riemerella anatipestifer CCUG25054 [QXHU]
210779
210864
+
Ser
TGA
[ENA]
¡û
>W2011329755
QXQJ01000001
Bacteroidota
Riemerella anatipestifer RCAD0421 [QXQJ]
70089
70174
+
Ser
TGA
[ENA]
¡û
>W2011329824
QXQK01000007
Bacteroidota
Riemerella anatipestifer RCAD0377 [QXQK]
45858
45773
-
Ser
TGA
[ENA]
¡û
>W2011329891
QXQM01000007
Bacteroidota
Riemerella anatipestifer RCAD0179 [QXQM]
96505
96420
-
Ser
TGA
[ENA]
¡û
>W2011329901
QXQN01000001
Bacteroidota
Riemerella anatipestifer RCAD0152-1 [QXQN]
101593
101678
+
Ser
TGA
[ENA]
¡û
>W2011329943
QXQO01000002
Bacteroidota
Riemerella anatipestifer RCAD0135 [QXQO]
99770
99855
+
Ser
TGA
[ENA]
¡û
>W2012103343
VOHQ01000001
Bacteroidota
Terrimonas sp. YJ03 [VOHQ]
528645
528560
-
Ser
TGA
[ENA]
¡û
>W2110026559
BMIK01000030
Bacteroidota
Parapedobacter defluvii CGMCC 1.15342 [BMIK]
25913
26000
+
Ser
TGA
[ENA]
¡û
>W2110063278
BOPJ01000002
Bacteroidota
Capnocytophaga stomatis 11058B-1 [BOPJ]
589929
590014
+
Ser
TGA
[ENA]
¡û
>W2110395447
JADWYR010000002
Bacteroidota
Panacibacter sp. DH6 [JADWYR]
151770
151683
-
Ser
TGA
[ENA]
¡û
>W2110535011
JAGFTY010000019
Bacteroidota
Riemerella anatipestifer 20190411Y1-2 [JAGFTY]
4652
4737
+
Ser
TGA
[ENA]
¡û
>W2110535047
JAGFTZ010000019
Bacteroidota
Riemerella anatipestifer 20190401Y1-1 [JAGFTZ]
2866
2781
-
Ser
TGA
[ENA]
¡û
>W2110535083
JAGFUA010000018
Bacteroidota
Riemerella anatipestifer 20190319E1-1 [JAGFUA]
4652
4737
+
Ser
TGA
[ENA]
¡û
>W2110535186
JAGFUD010000004
Bacteroidota
Riemerella anatipestifer 20180317E1-2 [JAGFUD]
98479
98394
-
Ser
TGA
[ENA]
¡û
>W2110535296
JAGFUG010000006
Bacteroidota
Riemerella anatipestifer 20190514E3-1 [JAGFUG]
4775
4860
+
Ser
TGA
[ENA]
¡û
>W2110535333
JAGFUH010000007
Bacteroidota
Riemerella anatipestifer 20190328E2-1 [JAGFUH]
93385
93300
-
Ser
TGA
[ENA]
¡û
>W2110535459
JAGFUL010000002
Bacteroidota
Riemerella anatipestifer 20190515J6-L [JAGFUL]
282406
282491
+
Ser
TGA
[ENA]
¡û
>W2110535588
JAGFUO010000008
Bacteroidota
Riemerella anatipestifer 20200106E1-1 [JAGFUO]
4773
4858
+
Ser
TGA
[ENA]
¡û
>W2110535656
JAGFUQ010000004
Bacteroidota
Riemerella anatipestifer 20200118E1-3 [JAGFUQ]
70395
70480
+
Ser
TGA
[ENA]
¡û
>C211367217
CP079205
Bacteroidota
Riemerella anatipestifer RA-YM [CP079205]
2088790
2088875
+
Ser
TGA
-
¡û
>C211390622
CP081923
Bacteroidota
Riemerella anatipestifer 20160930RA1 [CP081923]
2333293
2333378
+
Ser
TGA
-
¡û
>C211390782
CP081928
Bacteroidota
Riemerella anatipestifer 20190510E1-1 [CP081928]
2084723
2084808
+
Ser
TGA
-
¡û
>C211401682
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
1135522
1135437
-
Ser
TGA
-
¡û
>C231527799
CP110126
Bacteroidota
Riemerella anatipestifer S63 [CP110126]
1871557
1871642
+
Ser
TGA
-
¡û
>C241188635
CP095466
Bacteroidota
Riemerella anatipestifer RCAD0511 [CP095466]
2311611
2311696
+
Ser
TGA
-
¡û
>C241243096
CP121210
Bacteroidota
Riemerella anatipestifer RCAD0421 [CP121210]
2121889
2121974
+
Ser
TGA
-
¡û
>C11118451
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
2091058
2091145
+
Ser
TGA
[Ensembl]
¡û
>W1511499239
JXAC01000045
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
6180
6267
+
Ser
TGA
[ENA]
¡û
>W1511499263
JXAC01000163
Bacteroidota
Sphingobacterium sp. T2 [JXAC]
8462
8375
-
Ser
TGA
[ENA]
¡û
>C121012013
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
96307
96394
+
Ser
TGA
-
¡û
>W1610929330
LUDR01000007
Bacteroidota
Riemerella anatipestifer [LUDR]
104214
104301
+
Ser
TGA
[ENA]
¡û
>W1710533213
FNQY01000037
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
7528
7613
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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