This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538751 (19 seq.)
>W131221720
AUAR01000011
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
72444
72519
+
Gly
TCC
[ENA]
¡û
>W131221731
AUAR01000014
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
742
667
-
Gly
TCC
[ENA]
¡û
>WENV170640634
JFJP01023704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
255
180
-
Gly
TCC
[ENA]
¡û
>WENV170657630
JTFP01005602
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
978
1053
+
Gly
TCC
[ENA]
¡û
>WENV170657654
JTFP01007023
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1449
1374
-
Gly
TCC
[ENA]
¡û
>WENV170689329
LFRM01288881
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76
1
-
Gly
TCC
[ENA]
¡û
>W09108793
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
1019108
1019033
-
Gly
TCC
[ENA]
¡û
>W09108826
ABTP01000007
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
95645
95720
+
Gly
TCC
[ENA]
¡û
>W2110301755
JADBGG010000009
Thermodesulfobacteriota
Desulfomicrobium macestii DSM 4194 [JADBGG]
113993
114068
+
Gly
TCC
[ENA]
¡û
>W2110301761
JADBGG010000011
Thermodesulfobacteriota
Desulfomicrobium macestii DSM 4194 [JADBGG]
26539
26614
+
Gly
TCC
[ENA]
¡û
>C231425902
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
1155700
1155775
+
Gly
TCC
-
¡û
>C231425941
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
3116442
3116367
-
Gly
TCC
-
¡û
>C10104947
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
1068398
1068473
+
Gly
TCC
[Ensembl]
¡û
>C10104978
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
3169633
3169558
-
Gly
TCC
[Ensembl]
¡û
>C161069030
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2122710
2122785
+
Gly
TCC
[Ensembl]
¡û
>C161069068
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
243388
243313
-
Gly
TCC
[Ensembl]
¡û
>W1710566387
FORX01000028
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
582
507
-
Gly
TCC
[ENA]
¡û
>W1710568360
FOTO01000003
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
209472
209547
+
Gly
TCC
[ENA]
¡û
>W1710568376
FOTO01000007
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
64550
64475
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK