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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53897 (125 seq.)
>W131044573
AMQU01000004
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
185234
185148
-
Leu
CAG
[ENA]
¡û
>W131044574
AMQU01000004
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
108390
108301
-
Leu
CAG
[ENA]
¡û
>W1711113455
LTYJ01000003
Bacillota
Paenibacillus polymyxa [LTYJ]
134039
133951
-
Leu
CAG
[ENA]
¡û
>W1711113545
LTYJ01000083
Bacillota
Paenibacillus polymyxa [LTYJ]
4906
4819
-
Leu
CAG
[ENA]
¡û
>W131171948
ARGO01000036
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
108333
108419
+
Leu
CAG
[ENA]
¡û
>W131171949
ARGO01000036
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
199705
199793
+
Leu
CAG
[ENA]
¡û
>W131174416
ARIL01000032
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
256318
256230
-
Leu
CAG
[ENA]
¡û
>W131196003
ASSZ01000020
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
139208
139121
-
Leu
CAG
[ENA]
¡û
>W131196005
ASSZ01000020
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
106189
106101
-
Leu
CAG
[ENA]
¡û
>W1711677478
MRTN01000034
Bacillota
Paenibacillus peoriae [MRTN]
4379
4292
-
Leu
CAG
[ENA]
¡û
>W1711677680
MRTR01000003
Bacillota
Paenibacillus macerans [MRTR]
173331
173244
-
Leu
CAG
[ENA]
¡û
>W1711677681
MRTR01000003
Bacillota
Paenibacillus macerans [MRTR]
28844
28757
-
Leu
CAG
[ENA]
¡û
>W1711677689
MRTR01000022
Bacillota
Paenibacillus macerans [MRTR]
50050
49966
-
Leu
CAG
[ENA]
¡û
>C171010569
CP011420
Bacillota
Paenibacillus polymyxa ATCC 15970 [CP011420]
2011290
2011376
+
Leu
CAG
-
¡û
>C171104991
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
600421
600334
-
Leu
CAG
-
¡û
>W131044659
AMQU01000036
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
1900
1987
+
Leu
CAG
[ENA]
¡û
>W131174370
ARIL01000012
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
1870
1957
+
Leu
CAG
[ENA]
¡û
>W131174417
ARIL01000032
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
136402
136315
-
Leu
CAG
[ENA]
¡û
>W131196004
ASSZ01000020
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
124447
124363
-
Leu
CAG
[ENA]
¡û
>W141034839
ALJV01000106
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
57098
57186
+
Leu
CAG
[ENA]
¡û
>W141034840
ALJV01000107
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
61160
61249
+
Leu
CAG
[ENA]
¡û
>W141073278
ASSA01000093
Bacillota
Paenibacillus polymyxa TD94 [ASSA]
7677
7589
-
Leu
CAG
[ENA]
¡û
>W141073326
ASSB01000197
Bacillota
Paenibacillus sp. 1-18 [ASSB]
27205
27117
-
Leu
CAG
[ENA]
¡û
>W141073343
ASSB01000360
Bacillota
Paenibacillus sp. 1-18 [ASSB]
42407
42321
-
Leu
CAG
[ENA]
¡û
>W141073431
ASSD01000523
Bacillota
Paenibacillus zanthoxyli JH29 [ASSD]
6327
6411
+
Leu
CAG
[ENA]
¡û
>W141073523
ASSF01000369
Bacillota
Paenibacillus sophorae S27 [ASSF]
192
106
-
Leu
CAG
[ENA]
¡û
>W141073535
ASSF01000462
Bacillota
Paenibacillus sophorae S27 [ASSF]
8747
8660
-
Leu
CAG
[ENA]
¡û
>WENV183726743
PJTO01000114
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
37186
37099
-
Leu
CAG
[ENA]
¢þ
>WENV183726746
PJTO01000117
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
63340
63253
-
Leu
CAG
[ENA]
¢þ
>C181038565
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3202364
3202277
-
Leu
CAG
-
¡û
>C181043147
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
5198784
5198697
-
Leu
CAG
-
¡û
>C181043164
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
3745808
3745721
-
Leu
CAG
-
¡û
>C181043165
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
3646751
3646664
-
Leu
CAG
-
¡û
>C181182406
CP029639
Bacillota
Paenibacillus sp. DCT19 [CP029639]
2212411
2212498
+
Leu
CAG
-
¡û
>C191120078
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
502363
502450
+
Leu
CAG
-
¡û
>C191120112
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
1961835
1961921
+
Leu
CAG
-
¡û
>C191120113
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
2038022
2038111
+
Leu
CAG
-
¡û
>C191143947
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
469788
469700
-
Leu
CAG
-
¡û
>C191183144
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
5644439
5644353
-
Leu
CAG
-
¡û
>C191183145
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
5559364
5559275
-
Leu
CAG
-
¡û
>C191183174
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
1440301
1440214
-
Leu
CAG
-
¡û
>W09125249
ACIH01000004
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
4744
4830
+
Leu
CAG
[ENA]
¡û
>W09125250
ACIH01000004
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
18608
18692
+
Leu
CAG
[ENA]
¡û
>W09125251
ACIH01000004
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
30468
30555
+
Leu
CAG
[ENA]
¡û
>W141726794
JNCB01000009
Bacillota
Paenibacillus polymyxa [JNCB]
114899
114986
+
Leu
CAG
[ENA]
¡û
>W141726828
JNCB01000011
Bacillota
Paenibacillus polymyxa [JNCB]
758331
758417
+
Leu
CAG
[ENA]
¡û
>W141726829
JNCB01000011
Bacillota
Paenibacillus polymyxa [JNCB]
833825
833914
+
Leu
CAG
[ENA]
¡û
>W141754372
JNVM01000071
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
11300
11388
+
Leu
CAG
[ENA]
¡û
>W1910154938
BIME01000001
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
1130640
1130553
-
Leu
CAG
[ENA]
¡û
>W1910154939
BIME01000001
Bacillota
Paenibacillus illinoisensis NBRC 15959 [BIME]
1042238
1042151
-
Leu
CAG
[ENA]
¡û
>W1910505763
FYEP01000049
Bacillota
Paenibacillus tyrfis B69 [FYEP]
16147
16060
-
Leu
CAG
[ENA]
¡û
>W1910663977
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
689123
689210
+
Leu
CAG
[ENA]
¡û
>W1910663978
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
781911
781997
+
Leu
CAG
[ENA]
¡û
>W1910827159
MWSG01000009
Bacillota
Cohnella sp. CIP 111063 [MWSG]
213352
213439
+
Leu
CAG
[ENA]
¡û
>W1910827160
MWSG01000009
Bacillota
Cohnella sp. CIP 111063 [MWSG]
280661
280748
+
Leu
CAG
[ENA]
¡û
>W1911566530
PCOX01000001
Bacillota
Paenibacillus sp. MYb63 [PCOX]
787242
787329
+
Leu
CAG
[ENA]
¡û
>W1911566551
PCOX01000007
Bacillota
Paenibacillus sp. MYb63 [PCOX]
309302
309215
-
Leu
CAG
[ENA]
¡û
>W1810225394
POVS01000009
Bacillota
Paenibacillus sp. F4 [POVS]
535143
535056
-
Leu
CAG
[ENA]
¡û
>W1810225395
POVS01000009
Bacillota
Paenibacillus sp. F4 [POVS]
443047
442958
-
Leu
CAG
[ENA]
¡û
>W1810225494
POVT01000009
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
310411
310497
+
Leu
CAG
[ENA]
¡û
>W1810225495
POVT01000009
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
386516
386605
+
Leu
CAG
[ENA]
¡û
>W1810225581
POVT01000033
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
4882
4795
-
Leu
CAG
[ENA]
¡û
>W1810271917
PRLG01000009
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
325
412
+
Leu
CAG
[ENA]
¡û
>W1810271934
PRLG01000020
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
208461
208372
-
Leu
CAG
[ENA]
¡û
>W1810271935
PRLG01000020
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
120261
120174
-
Leu
CAG
[ENA]
¡û
>W1810296635
PTJM01000019
Bacillota
Paenibacillus peoriae IBSD35 [PTJM]
4594
4507
-
Leu
CAG
[ENA]
¡û
>W1810367682
PVYW01000009
Bacillota
Cohnella sp. SGD-V74 [PVYW]
213352
213439
+
Leu
CAG
[ENA]
¡û
>W1810367683
PVYW01000009
Bacillota
Cohnella sp. SGD-V74 [PVYW]
280661
280748
+
Leu
CAG
[ENA]
¡û
>W1810476629
QAOE01000004
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
501046
500960
-
Leu
CAG
[ENA]
¡û
>W1810476630
QAOE01000004
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
417364
417275
-
Leu
CAG
[ENA]
¡û
>W1810476654
QAOE01000018
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
162
249
+
Leu
CAG
[ENA]
¡û
>W1810671501
QJSW01000001
Bacillota
Paenibacillus barcinonensis CECT 7022 [QJSW]
388302
388215
-
Leu
CAG
[ENA]
¡û
>W1810671502
QJSW01000001
Bacillota
Paenibacillus barcinonensis CECT 7022 [QJSW]
311463
311377
-
Leu
CAG
[ENA]
¡û
>W1810671571
QJSW01000039
Bacillota
Paenibacillus barcinonensis CECT 7022 [QJSW]
1687
1774
+
Leu
CAG
[ENA]
¡û
>W1810684125
QKWW01000024
Bacillota
Paenibacillus silvae NC2 [QKWW]
12500
12586
+
Leu
CAG
[ENA]
¡û
>W1810684143
QKWW01000087
Bacillota
Paenibacillus silvae NC2 [QKWW]
46074
46161
+
Leu
CAG
[ENA]
¡û
>W1810684190
QKWW01000179
Bacillota
Paenibacillus silvae NC2 [QKWW]
580
667
+
Leu
CAG
[ENA]
¡û
>W1810787577
QRDU01000002
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
874330
874417
+
Leu
CAG
[ENA]
¡û
>W1810787578
QRDU01000002
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
966849
966935
+
Leu
CAG
[ENA]
¡û
>W1810787844
QRDZ01000055
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
5696
5783
+
Leu
CAG
[ENA]
¡û
>C151005551
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
221143
221227
+
Leu
CAG
[Ensembl]
¡û
>C151005563
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
980351
980438
+
Leu
CAG
[Ensembl]
¡û
>C151005576
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
2109804
2109891
+
Leu
CAG
[Ensembl]
¡û
>C151005577
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
2204341
2204425
+
Leu
CAG
[Ensembl]
¡û
>C151013721
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
416393
416480
+
Leu
CAG
[Ensembl]
¡û
>C151013755
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
1955369
1955455
+
Leu
CAG
[Ensembl]
¡û
>C151013756
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
2031399
2031488
+
Leu
CAG
[Ensembl]
¡û
>C11117645
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
462410
462497
+
Leu
CAG
[Ensembl]
¡û
>C11117679
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
1934069
1934155
+
Leu
CAG
[Ensembl]
¡û
>C11117680
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
2010382
2010471
+
Leu
CAG
[Ensembl]
¡û
>W1511480739
JWJJ01000002
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
1023052
1023138
+
Leu
CAG
[ENA]
¡û
>W1511480740
JWJJ01000002
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
1099880
1099969
+
Leu
CAG
[ENA]
¡û
>W1511480824
JWJJ01000018
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
1666
1753
+
Leu
CAG
[ENA]
¡û
>W1511585051
LAWY01000094
Bacillota
Paenibacillus larvae MEX14 [LAWY]
1360
1273
-
Leu
CAG
[ENA]
¡û
>C161022606
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
3408516
3408604
+
Leu
CAG
[Ensembl]
¡û
>C161022640
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
4915422
4915508
+
Leu
CAG
[Ensembl]
¡û
>C161022641
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
4991432
4991521
+
Leu
CAG
[Ensembl]
¡û
>C161034798
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
4532359
4532272
-
Leu
CAG
[Ensembl]
¡û
>C161053042
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
591107
591020
-
Leu
CAG
-
¡û
>W121009641
AGFI01000117
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
9279
9367
+
Leu
CAG
[ENA]
¡û
>W121009642
AGFI01000119
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
6922
7010
+
Leu
CAG
[ENA]
¡û
>W121009624
AGFI01000027
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
1512
1599
+
Leu
CAG
[ENA]
¡û
>W1610164080
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
514749
514662
-
Leu
CAG
[ENA]
¡û
>W1610164081
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
497509
497425
-
Leu
CAG
[ENA]
¡û
>W1610164082
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
461875
461791
-
Leu
CAG
[ENA]
¡û
>W1610207128
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
149287
149201
-
Leu
CAG
[ENA]
¡û
>W1610207129
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
123592
123508
-
Leu
CAG
[ENA]
¡û
>W1610207130
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
20334
20250
-
Leu
CAG
[ENA]
¡û
>W1610926507
LTYJ01000003
Bacillota
Paenibacillus polymyxa [LTYJ]
134039
133951
-
Leu
CAG
[ENA]
¡û
>W1610926597
LTYJ01000083
Bacillota
Paenibacillus polymyxa [LTYJ]
4906
4819
-
Leu
CAG
[ENA]
¡û
>W1710165747
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
514749
514662
-
Leu
CAG
[ENA]
¡û
>W1710165748
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
497509
497425
-
Leu
CAG
[ENA]
¡û
>W1710165749
FAUQ01000025
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
461875
461791
-
Leu
CAG
[ENA]
¡û
>W1710207822
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
149287
149201
-
Leu
CAG
[ENA]
¡û
>W1710207823
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
123592
123508
-
Leu
CAG
[ENA]
¡û
>W1710207824
FCOQ01000030
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
20334
20250
-
Leu
CAG
[ENA]
¡û
>W1710507726
FMVM01000008
Bacillota
Paenibacillus polysaccharolyticus BL9 [FMVM]
284877
284963
+
Leu
CAG
[ENA]
¡û
>W1710507735
FMVM01000022
Bacillota
Paenibacillus polysaccharolyticus BL9 [FMVM]
4729
4815
+
Leu
CAG
[ENA]
¡û
>W1710512590
FMZN01000001
Bacillota
Paenibacillus sp. CF095 [FMZN]
3155067
3154980
-
Leu
CAG
[ENA]
¡û
>W1710512591
FMZN01000001
Bacillota
Paenibacillus sp. CF095 [FMZN]
3068547
3068460
-
Leu
CAG
[ENA]
¡û
>W1710512615
FMZN01000005
Bacillota
Paenibacillus sp. CF095 [FMZN]
541
628
+
Leu
CAG
[ENA]
¡û
>W1710547825
FODH01000007
Bacillota
Paenibacillus sophorae [FODH]
79005
79089
+
Leu
CAG
[ENA]
¡û
>W1710547845
FODH01000013
Bacillota
Paenibacillus sophorae [FODH]
1653
1740
+
Leu
CAG
[ENA]
¡û
>W1710547852
FODH01000015
Bacillota
Paenibacillus sophorae [FODH]
12858
12944
+
Leu
CAG
[ENA]
¡û
>W1710547853
FODH01000015
Bacillota
Paenibacillus sophorae [FODH]
103952
104039
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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