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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53904 (57 seq.)
>W131109099
APHK01000410
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
2728
2815
+
Ser
TGA
[ENA]
¡û
>W131239508
BANS01000057
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
14851
14766
-
Ser
TGA
[ENA]
¡û
>W131239689
BANX01000009
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
33943
33856
-
Ser
TGA
[ENA]
¡û
>W141200034
AYXO01000009
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
158947
159034
+
Ser
TGA
[ENA]
¡û
>W141243898
CAJY01000016
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
140806
140893
+
Ser
TGA
[ENA]
¡û
>WENV170552805
CXWK01002194
[CXWK] wastewater metagenome; activated sludge
25782
25697
-
Ser
TGA
[ENA]
¡û
>WENV170553368
CXWK01016049
[CXWK] wastewater metagenome; activated sludge
13
98
+
Ser
TGA
[ENA]
¡û
>WENV170566219
FKKE01010877
[FKKE] freshwater metagenome; freshwater
90
3
-
Ser
TGA
[ENA]
¡û
>WENV170975553
MTKZ01001227
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
42516
42431
-
Ser
TGA
[ENA]
¡û
>PL191001653
LR134456
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:14 (LR134456)
356861
356946
+
Ser
TGA
[ENA]
¡û
>C191020761
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
270205
270292
+
Ser
TGA
-
¡û
>C191117147
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
3648505
3648420
-
Ser
TGA
-
¡û
>W141758754
JNYV01000002
Actinomycetota
Kitasatospora arboriphila [JNYV]
811905
811990
+
Ser
TGA
[ENA]
¡û
>W1910424371
FVPM01000158
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
10988
11073
+
Ser
TGA
[ENA]
¡û
>W1910611737
LFLR01000014
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
29985
29900
-
Ser
TGA
[ENA]
¡û
>W1810189545
PKJC01000010
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
51821
51908
+
Ser
TGA
[ENA]
¡û
>W1810577795
QEOM01000010
Actinomycetota
Williamsia marianensis DSM 44944 [QEOM]
168433
168518
+
Ser
TGA
[ENA]
¡û
>W1810658299
QJJF01000007
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
137370
137457
+
Ser
TGA
[ENA]
¡û
>W1810671183
QJSP01000004
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
8011
7924
-
Ser
TGA
[ENA]
¡û
>W2010098284
BJOU01000001
Actinomycetota
Gordonia sp. NBRC 107697 [BJOU]
450771
450686
-
Ser
TGA
[ENA]
¡û
>W2010465770
JAAGLS010000059
Actinomycetota
Streptomyces sp. SID11726 [JAAGLS]
59071
59156
+
Ser
TGA
[ENA]
¡û
>W2010467057
JAAGMM010000016
Actinomycetota
Streptomyces sp. SID6673 [JAAGMM]
59093
59178
+
Ser
TGA
[ENA]
¡û
>W2010575878
JAAVWM010000003
Actinomycetota
Gordonia paraffinivorans G5-ML2190 [JAAVWM]
48123
48208
+
Ser
TGA
[ENA]
¡û
>W2010576027
JAAVWP010000002
Actinomycetota
Gordonia paraffinivorans G2-ML2619/11 [JAAVWP]
106487
106574
+
Ser
TGA
[ENA]
¡û
>W2010576130
JAAVWR010000006
Actinomycetota
Gordonia paraffinivorans F12-ML1295/5 [JAAVWR]
156547
156632
+
Ser
TGA
[ENA]
¡û
>W2010591845
JABELY010000008
Actinomycetota
Gordonia araii NBRC 100433 IFM 10211 [JABELY]
4045
3958
-
Ser
TGA
[ENA]
¡û
>W2010686468
JACFXQ010000079
Actinomycetota
Gordonia amicalis BDS-I [JACFXQ]
16553
16466
-
Ser
TGA
[ENA]
¡û
>W2011539936
SCOC01000043
Actinomycetota
Gordonia sp. ALPHA1B1 [SCOC]
35403
35490
+
Ser
TGA
[ENA]
¡û
>W2011539963
SCOD01000049
Actinomycetota
Gordonia sp. ALPHA2A [SCOD]
35403
35490
+
Ser
TGA
[ENA]
¡û
>W2110019264
BMCS01000001
Actinomycetota
Williamsia phyllosphaerae CCM 7855 [BMCS]
1450910
1450997
+
Ser
TGA
[ENA]
¡û
>W2110493427
JAFFGU010000014
Actinomycetota
Gordonia rubripertincta BP-295 [JAFFGU]
44290
44377
+
Ser
TGA
[ENA]
¡û
>W2110495833
JAFFZF010000001
Actinomycetota
Gordonia sp. BP-119 [JAFFZF]
138431
138518
+
Ser
TGA
[ENA]
¡û
>C201302984
CP059491
Actinomycetota
Gordoniaceae bacterium 686 [CP059491]
316104
316191
+
Ser
TGA
-
¡û
>C211274966
CP070351
Actinomycetota
Gordonia sp. PDNC005 [CP070351]
3621263
3621178
-
Ser
TGA
-
¡û
>W2110709618
JAIYEP010000004
Actinomycetota
Rhodococcus sp. FBM22-1 [JAIYEP]
9799
9713
-
Ser
TGA
[ENA]
¡û
>C231019005
AP025688
Actinomycetota
Tsukamurella sp. PLM1 [AP025688]
4188198
4188113
-
Ser
TGA
-
¡û
>W2110746907
LHVQ01000014
Actinomycetota
Gordonia sihwensis MTZ 096 [LHVQ]
10526
10441
-
Ser
TGA
[ENA]
¡û
>C231361798
CP095552
Actinomycetota
Gordonia hongkongensis JCM 31934 [CP095552]
418253
418340
+
Ser
TGA
-
¡û
>C231575971
CP116236
Actinomycetota
Gordonia polyisoprenivorans 135 [CP116236]
422861
422946
+
Ser
TGA
-
¡û
>W1511461075
JVMD01000023
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
102134
102219
+
Ser
TGA
[ENA]
¡û
>C161037601
CP011853
Actinomycetota
Gordonia phthalatica QH-11 [CP011853]
303409
303494
+
Ser
TGA
[Ensembl]
¡û
>C161100024
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
410242
410329
+
Ser
TGA
-
¡û
>W1610078011
BDAP01000001
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
215850
215935
+
Ser
TGA
[ENA]
¡û
>W121123697
BAEE01000048
Actinomycetota
Gordonia araii NBRC 100433 [BAEE]
3920
3833
-
Ser
TGA
[ENA]
¡û
>W121124301
BAFB01000241
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
16322
16237
-
Ser
TGA
[ENA]
¡û
>W121124385
BAFD01000076
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
40349
40262
-
Ser
TGA
[ENA]
¡û
>W121126593
BAHC01000151
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
33680
33595
-
Ser
TGA
[ENA]
¡û
>C131001557
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
330805
330892
+
Ser
TGA
[Ensembl]
¡û
>W1610527658
JPYZ01000059
Actinomycetota
Gordonia sp. QH-12 [JPYZ]
584
499
-
Ser
TGA
[ENA]
¡û
>W1610910048
LSFR01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
158630
158545
-
Ser
TGA
[ENA]
¡û
>W1610919633
LSRH01000010
Actinomycetota
Tsukamurella pulmonis [LSRH]
2454
2369
-
Ser
TGA
[ENA]
¡û
>W1610919711
LSRI01000027
Actinomycetota
Tsukamurella pulmonis [LSRI]
76998
76913
-
Ser
TGA
[ENA]
¡û
>W1610919735
LSRJ01000004
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
8910
8825
-
Ser
TGA
[ENA]
¡û
>W1611041240
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
111902
111815
-
Ser
TGA
[ENA]
¡û
>W1611044103
LZTE01000025
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
95130
95215
+
Ser
TGA
[ENA]
¡û
>W1710076570
BDAP01000001
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
215850
215935
+
Ser
TGA
[ENA]
¡û
>W1710512139
FMZE01000003
Actinomycetota
Prauserella marina [FMZE]
157252
157337
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK