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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.539185 (38 seq.)
>W1710786939
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4456092
4456165
+
Trp
CCA
[ENA]
¡û
>W1710860281
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
266664
266591
-
Trp
CCA
[ENA]
¡û
>W1710866964
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
300170
300097
-
Trp
CCA
[ENA]
¡û
>W1711183411
LWLA01000012
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
292904
292831
-
Trp
CCA
[ENA]
¡û
>WENV180023354
FTHV01001125
[FTHV] metagenome; soil
3512
3585
+
Trp
CCA
[ENA]
¡û
>WENV180023515
FTHY01006354
[FTHY] metagenome; soil
1047
974
-
Trp
CCA
[ENA]
¡û
>WENV180024707
FTIJ01000366
[FTIJ] metagenome; soil
1315
1388
+
Trp
CCA
[ENA]
¡û
>WENV180033163
FTKF01003198
[FTKF] metagenome; soil
695
768
+
Trp
CCA
[ENA]
¡û
>WENV180033635
FTKL01000778
[FTKL] metagenome; soil
1136
1209
+
Trp
CCA
[ENA]
¡û
>W141282723
JAIY01000008
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
161661
161588
-
Trp
CCA
[ENA]
¡û
>WENV170565586
FJVZ01000650
[FJVZ] metagenome; soil
14974
15047
+
Trp
CCA
[ENA]
¡û
>C181116327
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
3532812
3532739
-
Trp
CCA
-
¡û
>W141757016
JNXO01001792
Actinomycetota
Kitasatospora misakiensis [JNXO]
126
199
+
Trp
CCA
[ENA]
¡û
>W141761925
JOBB01001140
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
410
483
+
Trp
CCA
[ENA]
¡û
>W141764993
JODB01002150
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
413
486
+
Trp
CCA
[ENA]
¡û
>W141766006
JODS01000006
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
20427
20500
+
Trp
CCA
[ENA]
¡û
>W141770028
JOGF01000377
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
1705
1632
-
Trp
CCA
[ENA]
¡û
>W141771123
JOGY01000542
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
2695
2768
+
Trp
CCA
[ENA]
¡û
>W141771986
JOHN01000075
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
22966
22893
-
Trp
CCA
[ENA]
¡û
>W2010705636
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
4722997
4723070
+
Trp
CCA
[ENA]
¡û
>W2011491057
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
2885208
2885281
+
Trp
CCA
[ENA]
¡û
>W2012047376
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3122139
3122066
-
Trp
CCA
[ENA]
¡û
>W2012230672
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
2356982
2356909
-
Trp
CCA
[ENA]
¡û
>W2110039425
BMSD01000006
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
26747
26820
+
Trp
CCA
[ENA]
¡û
>W2110053248
BNBO01000010
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
161946
161873
-
Trp
CCA
[ENA]
¡û
>W2110556241
JAGIYX010000016
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
62092
62165
+
Trp
CCA
[ENA]
¡û
>W2110645360
JAHTKP010000003
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
104899
104972
+
Trp
CCA
[ENA]
¡û
>C241202568
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
3864647
3864574
-
Trp
CCA
-
¡û
>C241209760
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
3935913
3935840
-
Trp
CCA
-
¡û
>C241210191
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5736361
5736434
+
Trp
CCA
-
¡û
>C241210294
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
3756286
3756213
-
Trp
CCA
-
¡û
>C241211714
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
4289500
4289427
-
Trp
CCA
-
¡û
>C241211784
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
4224905
4224832
-
Trp
CCA
-
¡û
>W1511555638
JZWY01000183
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
15688
15615
-
Trp
CCA
[ENA]
¡û
>W1511696824
LGDO01000515
Actinomycetota
Streptomyces sp. XY431 [LGDO]
15663
15590
-
Trp
CCA
[ENA]
¡û
>W1610650794
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4456092
4456165
+
Trp
CCA
[ENA]
¡û
>W1610722627
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
266664
266591
-
Trp
CCA
[ENA]
¡û
>W1610729310
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
300170
300097
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK