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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5404 (40 seq.)
>W1711222693
LXSG01000035
Betaproteobacteria
Eikenella corrodens [LXSG]
56949
57042
+
Ser
GCT
[ENA]
¡û
>W1711222970
LXSM01000016
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
258098
258005
-
Ser
GCT
[ENA]
¡û
>W1711223035
LXSO01000002
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
203480
203387
-
Ser
GCT
[ENA]
¡û
>W1711223073
LXSP01000001
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
203278
203185
-
Ser
GCT
[ENA]
¡û
>W1711223232
LXSS01000013
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
177327
177234
-
Ser
GCT
[ENA]
¡û
>W1711223247
LXST01000001
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
203399
203306
-
Ser
GCT
[ENA]
¡û
>W1711711038
MTAC01000001
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
2372
2279
-
Ser
GCT
[ENA]
¡û
>WENV180733904
ODGZ01001304
[ODGZ] human metagenome; G_DNA_Supragingival plaque
11143
11050
-
Ser
GCT
[ENA]
¡û
>WENV180834115
ODKD01003085
[ODKD] human metagenome; G_DNA_Supragingival plaque
2260
2167
-
Ser
GCT
[ENA]
¡û
>WENV180835873
ODKE01017458
[ODKE] human metagenome; G_DNA_Supragingival plaque
160
67
-
Ser
GCT
[ENA]
¡û
>WENV180889478
ODMN01046994
[ODMN] human metagenome; G_DNA_Supragingival plaque
191
98
-
Ser
GCT
[ENA]
¡û
>WENV180924420
ODTK01004733
[ODTK] human metagenome; G_DNA_Supragingival plaque
3206
3113
-
Ser
GCT
[ENA]
¡û
>WENV180973149
ODUW01001540
[ODUW] human metagenome; G_DNA_Supragingival plaque
3893
3986
+
Ser
GCT
[ENA]
¡û
>WENV181020103
ODWU01055097
[ODWU] human metagenome; G_DNA_Supragingival plaque
156
63
-
Ser
GCT
[ENA]
¡û
>WENV181029776
ODXF01003626
[ODXF] human metagenome; G_DNA_Supragingival plaque
2025
2118
+
Ser
GCT
[ENA]
¡û
>WENV181067581
ODZI01027707
[ODZI] human metagenome; G_DNA_Supragingival plaque
1249
1342
+
Ser
GCT
[ENA]
¡û
>WENV181129710
OEFX01092851
[OEFX] human metagenome; G_DNA_Tongue dorsum
109
202
+
Ser
GCT
[ENA]
¡û
>WENV181156574
OEIE01031706
[OEIE] human metagenome; G_DNA_Supragingival plaque
685
778
+
Ser
GCT
[ENA]
¡û
>W141202096
AZGQ01000002
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
132969
133062
+
Ser
GCT
[ENA]
¡û
>C181224110
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
1919022
1919115
+
Ser
GCT
-
¡û
>W1910551185
FZRL01000007
Betaproteobacteria
Kingella denitrificans [FZRL]
3424
3331
-
Ser
GCT
[ENA]
¡û
>W1910562098
FZZR01000002
Betaproteobacteria
Neisseria meningitidis [FZZR]
42309
42402
+
Ser
GCT
[ENA]
¡û
>W1911480133
OAFC01000121
Betaproteobacteria
Neisseria meningitidis [OAFC]
3363
3456
+
Ser
GCT
[ENA]
¡û
>W1911481963
OAGL01000020
Betaproteobacteria
Neisseria meningitidis [OAGL]
11662
11569
-
Ser
GCT
[ENA]
¡û
>W1911482612
OAGV01000206
Betaproteobacteria
Neisseria meningitidis [OAGV]
3174
3081
-
Ser
GCT
[ENA]
¡û
>W1911483064
OAHF01000005
Betaproteobacteria
Neisseria meningitidis [OAHF]
41069
41162
+
Ser
GCT
[ENA]
¡û
>W1911483834
OAHU01000001
Betaproteobacteria
Neisseria meningitidis [OAHU]
218073
218166
+
Ser
GCT
[ENA]
¡û
>W1911486549
OAJV01000188
Betaproteobacteria
Neisseria meningitidis [OAJV]
4038
4131
+
Ser
GCT
[ENA]
¡û
>W1911489261
OALW01000006
Betaproteobacteria
Neisseria meningitidis [OALW]
39981
40074
+
Ser
GCT
[ENA]
¡û
>W1911489888
OAMG01000222
Betaproteobacteria
Neisseria meningitidis [OAMG]
255
162
-
Ser
GCT
[ENA]
¡û
>W2010432715
FZRL01000007
Betaproteobacteria
Kingella denitrificans [FZRL]
3424
3331
-
Ser
GCT
[ENA]
¡û
>W2011826605
UGJL01000001
Betaproteobacteria
Kingella denitrificans NCTC10995 [UGJL]
733089
733182
+
Ser
GCT
[ENA]
¡û
>W2110199826
JACBKU010000034
Betaproteobacteria
Kingella kingae chl4475 [JACBKU]
432
339
-
Ser
GCT
[ENA]
¡û
>W2110199874
JACBKV010000032
Betaproteobacteria
Kingella kingae chl2764 [JACBKV]
11069
11162
+
Ser
GCT
[ENA]
¡û
>C201049177
CP031700
Betaproteobacteria
Neisseria zalophi ATCC BAA-2455 [CP031700]
1786994
1786901
-
Ser
GCT
-
¡û
>C211133443
CP060414
Betaproteobacteria
Neisseria musculi NW831 [CP060414]
1096681
1096588
-
Ser
GCT
-
¡û
>C211219681
CP065999
Betaproteobacteria
Kingella denitrificans FDAARGOS_1060 [CP065999]
476618
476525
-
Ser
GCT
-
¡û
>C231299879
CP091509
Betaproteobacteria
Neisseria dumasiana LMG 30012 [CP091509]
1693665
1693572
-
Ser
GCT
-
¡û
>W11151284
AEWV01000040
Betaproteobacteria
Kingella denitrificans ATCC 33394 [AEWV]
63357
63264
-
Ser
GCT
[ENA]
¡û
>W11177524
AGAZ01000060
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
10730
10823
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK