This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.542360 (15 seq.)
>W131229257
AUGR01000002
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
345223
345148
-
Phe
GAA
[ENA]
¡û
>W131229291
AUGR01000020
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
1517
1442
-
Phe
GAA
[ENA]
¡û
>WENV182575515
OJFV01000018
[OJFV] seawater metagenome; Sea water
1079
1004
-
Phe
GAA
[ENA]
¡û
>WENV170646649
JQIA01000753
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
16908
16983
+
Phe
GAA
[ENA]
¡û
>W2011482902
RQXV01000006
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
210723
210648
-
Phe
GAA
[ENA]
¡û
>W2110033955
BMOH01000002
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
211423
211348
-
Phe
GAA
[ENA]
¡û
>C211000206
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
183939
183864
-
Phe
GAA
-
¡û
>C231011226
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
94452
94527
+
Phe
GAA
-
¡û
>C231011300
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
446844
446769
-
Phe
GAA
-
¡û
>C231011303
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
109290
109365
+
Phe
GAA
-
¡û
>C231011379
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
425482
425407
-
Phe
GAA
-
¡û
>C231365273
CP096016
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12582 [CP096016]
2720400
2720475
+
Phe
GAA
-
¡û
>C231365318
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
1305587
1305662
+
Phe
GAA
-
¡û
>C231365370
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
1305887
1305962
+
Phe
GAA
-
¡û
>C231426274
CP100390
Gammaproteobacteria
Alkalimarinus sp. A2M4 [CP100390]
1032166
1032091
-
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK