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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5441 (47 seq.)
>W1710860515
LMCY01000002
Betaproteobacteria
Massilia sp. Root335 [LMCY]
1878
1785
-
Ser
GCT
[ENA]
¡û
>W1710863118
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
589727
589820
+
Ser
GCT
[ENA]
¡û
>W1710864698
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
379255
379348
+
Ser
GCT
[ENA]
¡û
>W1710893457
LNEU01000015
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
111242
111335
+
Ser
GCT
[ENA]
¡û
>W131181045
ARNP01000097
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
15324
15231
-
Ser
GCT
[ENA]
¡û
>W1711767640
MVAD01000001
Betaproteobacteria
Massilia sp. KIM [MVAD]
1980334
1980241
-
Ser
GCT
[ENA]
¡û
>C171088502
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
6312935
6313028
+
Ser
GCT
-
¡û
>C171130498
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
247895
247988
+
Ser
GCT
-
¡û
>WENV180020351
FTCZ01001939
[FTCZ] metagenome; soil
11505
11412
-
Ser
GCT
[ENA]
¡û
>WENV180022344
FTFY01001154
[FTFY] metagenome; soil
16666
16573
-
Ser
GCT
[ENA]
¡û
>WENV170575086
FLYN01030569
[FLYN] hot springs metagenome; Sediment
1617
1710
+
Ser
GCT
[ENA]
¡û
>WENV170708065
LNAP01047489
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
174
267
+
Ser
GCT
[ENA]
¡û
>WENV170708891
LNFM01000019
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
116403
116496
+
Ser
GCT
[ENA]
¡û
>W1911572381
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
5055274
5055367
+
Ser
GCT
[ENA]
¡û
>W1911618997
PPXQ01000012
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
131340
131247
-
Ser
GCT
[ENA]
¡û
>W1810330120
PUIP01000005
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
336507
336414
-
Ser
GCT
[ENA]
¡û
>C151062597
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2572894
2572987
+
Ser
GCT
[Ensembl]
¡û
>W2010534886
JAAOZT010000002
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
108851
108944
+
Ser
GCT
[ENA]
¡û
>W2010536021
JAAQOM010000015
Betaproteobacteria
Massilia sp. TW-1 [JAAQOM]
186014
186107
+
Ser
GCT
[ENA]
¡û
>W2010702810
JACHHQ010000001
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JACHHQ]
108087
108180
+
Ser
GCT
[ENA]
¡û
>W2011214658
PPXQ01000012
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
131340
131247
-
Ser
GCT
[ENA]
¡û
>W2011353307
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
2686539
2686632
+
Ser
GCT
[ENA]
¡û
>W2011675997
SPUM01000061
Betaproteobacteria
Massilia sp. ONC3 [SPUM]
42523
42430
-
Ser
GCT
[ENA]
¡û
>W2012426952
WSES01000003
Betaproteobacteria
Massilia sp. NEAU-DD11 [WSES]
619912
620005
+
Ser
GCT
[ENA]
¡û
>W2012509416
WXXL01000018
Betaproteobacteria
PMB3(1) [WXXL]
195669
195762
+
Ser
GCT
[ENA]
¡û
>W2110331077
JADKYX010000013
Betaproteobacteria
Massilia rhizosphaerae NEAU-GH312 [JADKYX]
160813
160906
+
Ser
GCT
[ENA]
¡û
>W2110560745
JAGKSG010000008
Betaproteobacteria
Massilia sp. AB1 [JAGKSG]
38647
38740
+
Ser
GCT
[ENA]
¡û
>W2110566765
JAGQED010000001
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
558742
558835
+
Ser
GCT
[ENA]
¡û
>W2110566819
JAGQEE010000001
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
1072019
1071926
-
Ser
GCT
[ENA]
¡û
>W2110566881
JAGQEF010000011
Betaproteobacteria
Collimonas sp. RXD172-2 [JAGQEF]
32586
32493
-
Ser
GCT
[ENA]
¡û
>W2110566939
JAGQEG010000181
Betaproteobacteria
Collimonas sp. RXD178 [JAGQEG]
67
160
+
Ser
GCT
[ENA]
¡û
>C211274255
CP070304
Betaproteobacteria
Glaciimonas sp. PAMC28666 [CP070304]
295540
295447
-
Ser
GCT
-
¡û
>C231623016
CP119520
Betaproteobacteria
Telluria mixta ACM 1762 [CP119520]
7006524
7006431
-
Ser
GCT
-
¡û
>W2130033504
JAGPWD010000036
Betaproteobacteria
Massilia sp. ZL223 [JAGPWD]
26014
25921
-
Ser
GCT
[ENA]
¡û
>C11105096
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2785026
2784933
-
Ser
GCT
[Ensembl]
¡û
>W1511310196
JPQD01000015
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
17345
17438
+
Ser
GCT
[ENA]
¡û
>W1511657404
LELH02000003
Betaproteobacteria
Massilia sp. WF1 [LELH]
85242
85335
+
Ser
GCT
[ENA]
¡û
>C161043169
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
2540512
2540605
+
Ser
GCT
-
¡û
>C161053617
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3253622
3253529
-
Ser
GCT
[Ensembl]
¡û
>C161053711
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3136614
3136521
-
Ser
GCT
[Ensembl]
¡û
>C161053785
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2461086
2461179
+
Ser
GCT
[Ensembl]
¡û
>W1610722861
LMCY01000002
Betaproteobacteria
Massilia sp. Root335 [LMCY]
1878
1785
-
Ser
GCT
[ENA]
¡û
>W1610725464
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
589727
589820
+
Ser
GCT
[ENA]
¡û
>W1610727044
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
379255
379348
+
Ser
GCT
[ENA]
¡û
>W1610753723
LNEU01000015
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
111242
111335
+
Ser
GCT
[ENA]
¡û
>W1710512854
FMZS01000010
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
99076
99169
+
Ser
GCT
[ENA]
¡û
>W1710564210
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
363954
363861
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK