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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.544254 (41 seq.)
>W1710806110
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
182017
181942
-
Lys
CTT
[ENA]
¡û
>W131160979
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
76206
76281
+
Lys
CTT
[ENA]
¡û
>W131215465
ATVA01000013
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
339834
339759
-
Lys
CTT
[ENA]
¡û
>W131236083
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
129171
129246
+
Lys
CTT
[ENA]
¡û
>WENV180043599
LQAI01001838
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2641
2566
-
Lys
CTT
[ENA]
¡û
>WENV180043600
LQAI01001838
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2383
2308
-
Lys
CTT
[ENA]
¡û
>WENV180043970
LQAJ01000136
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
27547
27622
+
Lys
CTT
[ENA]
¡û
>WENV180043971
LQAJ01000136
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
27804
27879
+
Lys
CTT
[ENA]
¡û
>WENV183706209
PDWI01003437
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16415
16340
-
Lys
CTT
[ENA]
¡û
>WENV183746856
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
72909
72984
+
Lys
CTT
[ENA]
¡û
>WENV170419814
CEUM01137962
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35902
35827
-
Lys
CTT
[ENA]
¡û
>WENV170437714
CEUU01060724
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2761
2836
+
Lys
CTT
[ENA]
¡û
>WENV170441908
CEUV01298121
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1779
1704
-
Lys
CTT
[ENA]
¡û
>WENV170895353
MDTD01078053
[MDTD] marine metagenome; seawater
14628
14553
-
Lys
CTT
[ENA]
¡û
>C181226971
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
219658
219733
+
Lys
CTT
-
¡û
>W1911738009
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
271690
271765
+
Lys
CTT
[ENA]
¡û
>W2011303456
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
271690
271765
+
Lys
CTT
[ENA]
¡û
>W2011654888
SOBK01000003
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
351671
351746
+
Lys
CTT
[ENA]
¡û
>W2012226825
WAIE01000001
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
1143436
1143511
+
Lys
CTT
[ENA]
¡û
>W2012442061
WUEH01000025
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
45633
45708
+
Lys
CTT
[ENA]
¡û
>W2110515213
JAFMPN010000001
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
41530
41455
-
Lys
CTT
[ENA]
¡û
>C231004611
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
646118
646043
-
Lys
CTT
-
¡û
>C231343585
CP094380
Thermodesulfobacteriota
Pseudodesulfovibrio tunisiensis RB22 [CP094380]
606796
606871
+
Lys
CTT
-
¡û
>C231343586
CP094380
Thermodesulfobacteriota
Pseudodesulfovibrio tunisiensis RB22 [CP094380]
607037
607112
+
Lys
CTT
-
¡û
>C231343587
CP094380
Thermodesulfobacteriota
Pseudodesulfovibrio tunisiensis RB22 [CP094380]
607265
607340
+
Lys
CTT
-
¡û
>C231631046
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
2180415
2180340
-
Lys
CTT
-
¡û
>C231631047
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
2180178
2180103
-
Lys
CTT
-
¡û
>C231631048
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
2179944
2179869
-
Lys
CTT
-
¡û
>C241008593
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
855905
855830
-
Lys
CTT
-
¡û
>C241008594
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
855713
855638
-
Lys
CTT
-
¡û
>C241053583
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
2482934
2483009
+
Lys
CTT
-
¡û
>C241108994
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2892907
2892982
+
Lys
CTT
-
¡û
>C241149560
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3678102
3678027
-
Lys
CTT
-
¡û
>C241149561
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3677897
3677822
-
Lys
CTT
-
¡û
>W11149116
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
43392
43317
-
Lys
CTT
[ENA]
¡û
>C121009010
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
701067
700992
-
Lys
CTT
[Ensembl]
¡û
>C161068252
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2492647
2492722
+
Lys
CTT
[Ensembl]
¡û
>W1610046031
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
18769
18844
+
Lys
CTT
[ENA]
¡û
>C131017907
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
290283
290358
+
Lys
CTT
[Ensembl]
¡û
>W1710042827
BBCB01000001
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
18769
18844
+
Lys
CTT
[ENA]
¡û
>W1710602311
FUYC01000009
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
96043
96118
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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