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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.544296 (18 seq.)
>C016569
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1981140
1981065
-
Ala
GGC
[Ensembl]
¡û
>WENV182575479
OJFV01000001
[OJFV] seawater metagenome; Sea water
384896
384821
-
Ala
GGC
[ENA]
¡û
>WENV183055732
OLHF01000531
[OLHF] seawater metagenome; Sea water
161
86
-
Ala
GGC
[ENA]
¡û
>WENV170647017
JQIA01008233
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5093
5168
+
Ala
GGC
[ENA]
¡û
>W09105745
AAQS01000001
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
335088
335163
+
Ala
GGC
[ENA]
¡û
>W1911811020
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142848
142773
-
Ala
GGC
[ENA]
¡û
>W1911811021
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142753
142678
-
Ala
GGC
[ENA]
¡û
>W1911811022
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142658
142583
-
Ala
GGC
[ENA]
¡û
>W1911811023
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142563
142488
-
Ala
GGC
[ENA]
¡û
>W2011345678
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142848
142773
-
Ala
GGC
[ENA]
¡û
>W2011345679
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142753
142678
-
Ala
GGC
[ENA]
¡û
>W2011345680
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142658
142583
-
Ala
GGC
[ENA]
¡û
>W2011345681
QZCH01000005
Gammaproteobacteria
Motilimonas sp. PLHSC7-2 [QZCH]
142563
142488
-
Ala
GGC
[ENA]
¡û
>C231365262
CP096016
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12582 [CP096016]
1394549
1394624
+
Ala
GGC
-
¡û
>C231365337
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
4798766
4798841
+
Ala
GGC
-
¡û
>C231365389
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
4799099
4799174
+
Ala
GGC
-
¡û
>C231426263
CP100390
Gammaproteobacteria
Alkalimarinus sp. A2M4 [CP100390]
2547554
2547479
-
Ala
GGC
-
¡û
>C231437881
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
1771835
1771760
-
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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