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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.544965 (18 seq.)
>W131208419
ATHJ01000076
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
4036
4111
+
Ala
GGC
[ENA]
¡û
>W131227178
AUEY01000072
Thermodesulfobacteriota
Desulforegula conservatrix Mb1Pa [AUEY]
601
526
-
Ala
GGC
[ENA]
¡û
>C171038085
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1574195
1574120
-
Ala
GGC
-
¡û
>C171100891
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1574548
1574473
-
Ala
GGC
-
¡û
>WENV180346028
OBLN01020385
[OBLN] sediment metagenome; sediment
797
872
+
Ala
GGC
[ENA]
¡û
>W141150578
AXAM01000053
Thermodesulfobacteriota
Desulfosarcina sp. BuS5 [AXAM]
19518
19593
+
Ala
GGC
[ENA]
¡û
>WENV183703037
PDVJ01001859
[PDVJ] alkali sediment metagenome; glacial lake sediment
4389
4314
-
Ala
GGC
[ENA]
¡û
>WENV170006847
AMWB02058331
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
4337
4412
+
Ala
GGC
[ENA]
¡û
>WENV170696987
LGVF01070212
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1531
1606
+
Ala
GGC
[ENA]
¡û
>WENV170698259
LGVF01299184
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
957
882
-
Ala
GGC
[ENA]
¡û
>W2110073860
CABEFZ010000004
Thermodesulfobacteriota
Desulfosarcina cetonica xyz [CABEFZ]
56271
56346
+
Ala
GGC
[ENA]
¡û
>C211153485
CP061799
Thermodesulfobacteriota
Desulfonema limicola 5ac10 [CP061799]
1678157
1678082
-
Ala
GGC
-
¡û
>C231247141
CP087952
Thermodesulfobacteriota
Desulfosarcina sp. BuS5 [CP087952]
2886001
2886076
+
Ala
GGC
-
¡û
>C241004508
AP021876
Thermodesulfobacteriota
Desulfosarcina ovata subsp. sediminis 28bB2T [AP021876]
2682723
2682648
-
Ala
GGC
-
¡û
>C241004557
AP021879
Thermodesulfobacteriota
Desulfosarcina ovata subsp. ovata oXyS1 [AP021879]
2536632
2536557
-
Ala
GGC
-
¡û
>W1610046127
BBCC01000200
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
6532
6607
+
Ala
GGC
[ENA]
¡û
>W1710042923
BBCC01000200
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
6532
6607
+
Ala
GGC
[ENA]
¡û
>W1710600538
FUWN01000006
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
214778
214703
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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