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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.545500 (15 seq.)
>W131215447
ATVA01000011
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
295698
295773
+
Thr
TGT
[ENA]
¡û
>WENV170419476
CEUM01129283
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12552
12627
+
Thr
TGT
[ENA]
¡û
>WENV170438198
CEUU01106488
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
923
998
+
Thr
TGT
[ENA]
¡û
>WENV170441479
CEUV01178226
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
434
509
+
Thr
TGT
[ENA]
¡û
>WENV170901922
MDTD01177896
[MDTD] marine metagenome; seawater
6816
6891
+
Thr
TGT
[ENA]
¡û
>C181226987
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4100211
4100286
+
Thr
TGT
-
¡û
>W2011654908
SOBK01000012
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
13580
13655
+
Thr
TGT
[ENA]
¡û
>W2012405144
WODC01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
188066
187991
-
Thr
TGT
[ENA]
¡û
>W10111362
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34375
34300
-
Thr
TGT
[ENA]
¡û
>C231631006
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
1246427
1246502
+
Thr
TGT
-
¡û
>C241108986
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2585835
2585910
+
Thr
TGT
-
¡û
>C241149548
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3941513
3941438
-
Thr
TGT
-
¡û
>C11106864
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2476497
2476422
-
Thr
TGT
[Ensembl]
¡û
>W11114305
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
34375
34300
-
Thr
TGT
[ENA]
¡û
>C161068265
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3236323
3236248
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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