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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.547066 (51 seq.)
>C171064240
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2452580
2452655
+
Val
TAC
-
¡û
>C171064250
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590402
2590477
+
Val
TAC
-
¡û
>C171064277
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618481
2618556
+
Val
TAC
-
¡û
>C171064313
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
715977
715902
-
Val
TAC
-
¡û
>C171064320
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709678
709603
-
Val
TAC
-
¡û
>C171064347
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695736
695661
-
Val
TAC
-
¡û
>C171064359
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689012
688937
-
Val
TAC
-
¡û
>C171109187
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1258406
1258481
+
Val
TAC
-
¡û
>C171109197
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396228
1396303
+
Val
TAC
-
¡û
>C171109224
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424306
1424381
+
Val
TAC
-
¡û
>C171109255
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108529
4108454
-
Val
TAC
-
¡û
>C171109262
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4102230
4102155
-
Val
TAC
-
¡û
>C171109289
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4088288
4088213
-
Val
TAC
-
¡û
>C171109301
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081564
4081489
-
Val
TAC
-
¡û
>w017067
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1797
1720
-
Val
TAC
[ENA]
¡û
>w017057
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1523
1446
-
Val
TAC
[ENA]
¡û
>w017041
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
2993
2916
-
Val
TAC
[ENA]
¡û
>w017031
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7179
7102
-
Val
TAC
[ENA]
¡û
>C08000736
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2612345
2612273
-
Val
TAC
[Ensembl]
¡û
>C08000752
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2610875
2610803
-
Val
TAC
[Ensembl]
¡û
>C08000763
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604551
2604479
-
Val
TAC
[Ensembl]
¡û
>C08000785
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1923974
1923902
-
Val
TAC
[Ensembl]
¡û
>WENV170561385
CZCA01007651
[CZCA] anaerobic digester metagenome; anaerobic digester
1866
1941
+
Val
TAC
[ENA]
¡û
>WENV170563826
CZCB01031002
[CZCB] anaerobic digester metagenome; anaerobic digester
365
290
-
Val
TAC
[ENA]
¡û
>WENV170690362
LFRM01337263
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3992
4067
+
Val
TAC
[ENA]
¡û
>W1910548262
FZOJ01000038
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
17993
17918
-
Val
TAC
[ENA]
¡û
>W1910665406
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1238
1313
+
Val
TAC
[ENA]
¡û
>C151057219
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1053907
1053982
+
Val
TAC
[Ensembl]
¡û
>C151057229
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166986
1167061
+
Val
TAC
[Ensembl]
¡û
>C151057245
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178443
1178518
+
Val
TAC
[Ensembl]
¡û
>C151057273
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724444
3724369
-
Val
TAC
[Ensembl]
¡û
>W2010430023
FZOJ01000038
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
17993
17918
-
Val
TAC
[ENA]
¡û
>W2010806347
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1238
1313
+
Val
TAC
[ENA]
¡û
>W2011624147
SLYC01000021
Bacillota
Serpentinicella alkaliphila DSM 100013 [SLYC]
182
257
+
Val
TAC
[ENA]
¡û
>W2011624155
SLYC01000080
Bacillota
Serpentinicella alkaliphila DSM 100013 [SLYC]
5673
5598
-
Val
TAC
[ENA]
¡û
>W2110622720
JAHLQK010000004
Bacillota
Alkaliphilus sp. MSJ-5 [JAHLQK]
238963
238888
-
Val
TAC
[ENA]
¡û
>W2110622743
JAHLQK010000015
Bacillota
Alkaliphilus sp. MSJ-5 [JAHLQK]
1175
1100
-
Val
TAC
[ENA]
¡û
>C211116799
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
2101845
2101920
+
Val
TAC
-
¡û
>C211116808
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
2320017
2320092
+
Val
TAC
-
¡û
>C211116837
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
582634
582559
-
Val
TAC
-
¡û
>C211116853
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
581127
581052
-
Val
TAC
-
¡û
>C211116864
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
574732
574657
-
Val
TAC
-
¡û
>W1511527522
JYHU01000003
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
107575
107500
-
Val
TAC
[ENA]
¡û
>W1710520421
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
549970
549895
-
Val
TAC
[ENA]
¡û
>W1710520443
FNFP01000003
Bacillota
Natronincola ferrireducens [FNFP]
234693
234768
+
Val
TAC
[ENA]
¡û
>W1710520452
FNFP01000015
Bacillota
Natronincola ferrireducens [FNFP]
15828
15753
-
Val
TAC
[ENA]
¡û
>W1710553658
FOHU01000012
Bacillota
Natronincola peptidivorans [FOHU]
6694
6769
+
Val
TAC
[ENA]
¡û
>W1710589526
FRAG01000014
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
516
591
+
Val
TAC
[ENA]
¡û
>W1710589539
FRAG01000028
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
31066
30991
-
Val
TAC
[ENA]
¡û
>W1710589690
FRAJ01000008
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
135759
135684
-
Val
TAC
[ENA]
¡û
>W1710604177
FUZT01000001
Bacillota
Maledivibacter halophilus [FUZT]
869689
869764
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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