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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.547793 (17 seq.)
>W1711503591
MKTT01000061
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
91360
91433
+
Asn
GTT
[ENA]
¡û
>W1711503592
MKTT01000061
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
91519
91592
+
Asn
GTT
[ENA]
¡û
>C171089126
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
1386151
1386078
-
Asn
GTT
-
¡û
>C171089127
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
1385807
1385734
-
Asn
GTT
-
¡û
>WENV170661586
JXWV01064628
[JXWV] soil metagenome; rice field; organic FYM Plot
383
456
+
Asn
GTT
[ENA]
¡û
>W2010495242
JAALCR010000054
Planctomycetota
Paludisphaera sp. JC665 [JAALCR]
12514
12440
-
Asn
GTT
[ENA]
¡û
>W2010499376
JAALJH010000004
Planctomycetota
Aquisphaera sp. JC669 [JAALJH]
115058
115131
+
Asn
GTT
[ENA]
¡û
>W2010499435
JAALJI010000003
Planctomycetota
Paludisphaera sp. JC670 [JAALJI]
80784
80711
-
Asn
GTT
[ENA]
¡û
>W2010499436
JAALJI010000003
Planctomycetota
Paludisphaera sp. JC670 [JAALJI]
80615
80542
-
Asn
GTT
[ENA]
¡û
>W2010681860
JACEHG010000001
Planctomycetota
Tautonia sp. JC636 [JACEHG]
177490
177563
+
Asn
GTT
[ENA]
¡û
>W2010681971
JACEHI010000001
Planctomycetota
Tautonia sp. JC649 [JACEHI]
177350
177423
+
Asn
GTT
[ENA]
¡û
>W2012317667
WEZF01000021
Planctomycetota
Aquisphaera sp. JC650 [WEZF]
97949
97876
-
Asn
GTT
[ENA]
¡û
>W2110637464
JAHPZK010000057
Planctomycetota
Paludisphaera sp. JC747 [JAHPZK]
12515
12441
-
Asn
GTT
[ENA]
¡û
>C241070964
CP042997
Planctomycetota
Aquisphaera giovannonii OJF2 [CP042997]
3866075
3866148
+
Asn
GTT
-
¡û
>C11111484
CP002353
Planctomycetota
Isosphaera pallida ATCC 43644 [CP002353]
3561885
3561812
-
Asn
GTT
[Ensembl]
¡û
>C161033447
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
4552328
4552255
-
Asn
GTT
-
¡û
>C161033448
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
4552151
4552078
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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