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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55282 (42 seq.)
>W1712084117
NHQT01000001
Actinomycetota
Nocardioides sp. XL1 [NHQT]
38035
37946
-
Ser
CGA
[ENA]
¡û
>W131227880
AUFN01000009
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
595579
595668
+
Ser
CGA
[ENA]
¡û
>C015183
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
303375
303464
+
Ser
CGA
[Ensembl]
¡û
>WENV180039563
LLBY010094397
[LLBY] soil metagenome; soil from tomato rhizosphere
215
304
+
Ser
CGA
[ENA]
¡û
>WENV180695167
OCZS013129377
[OCZS] soil metagenome; soil
170
81
-
Ser
CGA
[ENA]
¡û
>WENV183734678
PJTZ01038604
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
120
31
-
Ser
CGA
[ENA]
¡û
>W09103258
AAJB01000017
Actinomycetota
Nocardioides sp. JS614 [AAJB]
58890
58979
+
Ser
CGA
[ENA]
¡û
>C191158862
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
2221126
2221037
-
Ser
CGA
-
¡û
>C191187015
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
2409300
2409211
-
Ser
CGA
-
¡û
>W141775193
JOJN01000003
Actinomycetota
Nocardioides aequoreus [JOJN]
251878
251967
+
Ser
CGA
[ENA]
¡û
>W1910181557
BJMC01000024
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
113270
113359
+
Ser
CGA
[ENA]
¡û
>W1810626164
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
548188
548277
+
Ser
CGA
[ENA]
¡û
>C151061342
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
5024493
5024404
-
Ser
CGA
[Ensembl]
¡û
>W2010095206
BJMC01000024
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
113270
113359
+
Ser
CGA
[ENA]
¡û
>W2010471680
JAAGXA010000003
Actinomycetota
Nocardioides zeae JCM 30728 [JAAGXA]
208925
208836
-
Ser
CGA
[ENA]
¡û
>W2010669107
JACCAC010000001
Actinomycetota
Nocardioides perillae DSM 24552 [JACCAC]
759094
759183
+
Ser
CGA
[ENA]
¡û
>W2010669166
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
3571470
3571381
-
Ser
CGA
[ENA]
¡û
>W2010674843
JACCFP010000001
Actinomycetota
Nocardioides thalensis DSM 103833 [JACCFP]
4020533
4020444
-
Ser
CGA
[ENA]
¡û
>W2010682128
JACEIC010000002
Actinomycetota
Nocardioides sp. CGMCC 1.13656 [JACEIC]
2471515
2471604
+
Ser
CGA
[ENA]
¡û
>W2010715530
JACHWR010000002
Actinomycetota
Nocardioides soli DSM 105498 [JACHWR]
180699
180788
+
Ser
CGA
[ENA]
¡û
>W2011546726
SDKM01000007
Actinomycetota
Nocardioides sp. 130 [SDKM]
25741
25830
+
Ser
CGA
[ENA]
¡û
>W2011693573
SSXI01000127
Actinomycetota
Nocardioides bacterium 21Sc5-5 [SSXI]
12776
12864
+
Ser
CGA
[ENA]
¡û
>W2011694913
STGK01000010
Actinomycetota
Nocardioides sp. GY 10113 [STGK]
46693
46603
-
Ser
CGA
[ENA]
¡û
>W2011985526
VDMR01000002
Actinomycetota
Nocardioides litoris DSM 103718 [VDMR]
79751
79662
-
Ser
CGA
[ENA]
¡û
>W2012232876
WBVM01000001
Actinomycetota
Pimelobacter simplex Pch-N [WBVM]
2528450
2528361
-
Ser
CGA
[ENA]
¡û
>W2012426706
WSEK01000004
Actinomycetota
Nocardioides sp. MAH-18 [WSEK]
2471515
2471604
+
Ser
CGA
[ENA]
¡û
>W2110293205
JACYXZ010000005
Actinomycetota
Nocardioides sp. MJB4 [JACYXZ]
225314
225403
+
Ser
CGA
[ENA]
¡û
>W2110441155
JAERJA010000005
Actinomycetota
Nocardioides sp. DJM-14 [JAERJA]
68860
68771
-
Ser
CGA
[ENA]
¡û
>W2110493778
JAFFJT010000016
Actinomycetota
Nocardioides sp. SYSU D00038 [JAFFJT]
66831
66742
-
Ser
CGA
[ENA]
¡û
>W2110669913
JAIEZQ010000001
Actinomycetota
Nocardioides sp. WL0053 [JAIEZQ]
1263372
1263461
+
Ser
CGA
[ENA]
¡û
>W2110695145
JAIQZK010000012
Actinomycetota
Nocardioides sp. TRM66260-LWL [JAIQZK]
3578
3490
-
Ser
CGA
[ENA]
¡û
>C211342513
CP076104
Actinomycetota
Nocardioides sp. LMS-CY [CP076104]
520701
520790
+
Ser
CGA
-
¡û
>C211394334
CP082273
Actinomycetota
Nocardioides sp. SCSIO 67246 [CP082273]
194506
194595
+
Ser
CGA
-
¡û
>W1510060502
CCXJ01000089
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
2798
2711
-
Ser
CGA
[ENA]
¡û
>C231319147
CP092535
Actinomycetota
Nocardioides sp. TF02-7 [CP092535]
2227525
2227614
+
Ser
CGA
-
¡û
>W2110752398
NHTS01000001
Actinomycetota
Pimelobacter sp. 30-1 [NHTS]
640804
640893
+
Ser
CGA
[ENA]
¡û
>C231368867
CP096276
Actinomycetota
Pimelobacter simplex N40 [CP096276]
4348790
4348701
-
Ser
CGA
-
¡û
>C231395630
CP097984
Actinomycetota
Pimelobacter simplex N39 [CP097984]
585444
585355
-
Ser
CGA
-
¡û
>C241176426
CP059164
Actinomycetota
Nocardioides ungokensis LMG 28591 [CP059164]
375353
375442
+
Ser
CGA
-
¡û
>C241221106
CP113431
Actinomycetota
Nocardioides sp. Arc9.136 [CP113431]
236711
236800
+
Ser
CGA
-
¡û
>W1710512534
FMZM01000004
Actinomycetota
Nocardioides lianchengensis [FMZM]
332020
331931
-
Ser
CGA
[ENA]
¡û
>W1710569390
FOUK01000001
Actinomycetota
Pimelobacter simplex [FOUK]
344088
344177
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK