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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55512 (54 seq.)
>W1711212828
LXJQ01000008
Gammaproteobacteria
Pseudomonas sp. 1D4 [LXJQ]
65302
65391
+
Ser
CGA
[ENA]
¡û
>W1711256263
LYSP01000031
Gammaproteobacteria
Pseudomonas sp. ENNP23 [LYSP]
15226
15137
-
Ser
CGA
[ENA]
¡û
>W1711945806
NBMS01000014
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
6627
6538
-
Ser
CGA
[ENA]
¡û
>C171044826
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4818805
4818716
-
Ser
CGA
-
¡û
>W131231082
AUIE01000006
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
250901
250990
+
Ser
CGA
[ENA]
¡û
>WENV180039863
LLBY010190032
[LLBY] soil metagenome; soil from tomato rhizosphere
296
385
+
Ser
CGA
[ENA]
¡û
>W141076168
ATCP01000178
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
25537
25448
-
Ser
CGA
[ENA]
¡û
>W141231077
BATO01000017
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
25752
25663
-
Ser
CGA
[ENA]
¡û
>WENV170966639
MTEY01002008
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
9255
9166
-
Ser
CGA
[ENA]
¡û
>C181000762
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
4747169
4747080
-
Ser
CGA
-
¡û
>C191091965
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
5645073
5645162
+
Ser
CGA
-
¡û
>W1810378823
PXJI01000239
Gammaproteobacteria
Pseudomonas otitidis PAM-1 [PXJI]
3351
3440
+
Ser
CGA
[ENA]
¡û
>W1810680770
QKRU01000072
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
563
474
-
Ser
CGA
[ENA]
¡û
>C151001284
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4874957
4874868
-
Ser
CGA
[Ensembl]
¡û
>W2010523212
JAANPJ010000009
Gammaproteobacteria
Pseudomonas otitidis 41M [JAANPJ]
66755
66666
-
Ser
CGA
[ENA]
¡û
>W2010523251
JAANPK010000003
Gammaproteobacteria
Pseudomonas otitidis 39M [JAANPK]
184031
184120
+
Ser
CGA
[ENA]
¡û
>W2010523327
JAANPL010000009
Gammaproteobacteria
Pseudomonas otitidis 38M [JAANPL]
66755
66666
-
Ser
CGA
[ENA]
¡û
>W2010523362
JAANPM010000001
Gammaproteobacteria
Pseudomonas otitidis 36M [JAANPM]
182687
182776
+
Ser
CGA
[ENA]
¡û
>W2010523420
JAANPN010000001
Gammaproteobacteria
Pseudomonas otitidis 35M [JAANPN]
257099
257010
-
Ser
CGA
[ENA]
¡û
>W2010523495
JAANPO010000012
Gammaproteobacteria
Pseudomonas otitidis 34M [JAANPO]
7476
7565
+
Ser
CGA
[ENA]
¡û
>W2010523545
JAANPP010000006
Gammaproteobacteria
Pseudomonas otitidis 32M [JAANPP]
66809
66720
-
Ser
CGA
[ENA]
¡û
>W2010523604
JAANPQ010000003
Gammaproteobacteria
Pseudomonas otitidis 15M [JAANPQ]
138664
138753
+
Ser
CGA
[ENA]
¡û
>W2010523704
JAANPR010000326
Gammaproteobacteria
Pseudomonas otitidis 13M [JAANPR]
91
2
-
Ser
CGA
[ENA]
¡û
>W2010523705
JAANPR010000329
Gammaproteobacteria
Pseudomonas otitidis 13M [JAANPR]
3561
3472
-
Ser
CGA
[ENA]
¡û
>W2010523764
JAANPS010000058
Gammaproteobacteria
Pseudomonas otitidis 12M [JAANPS]
14789
14700
-
Ser
CGA
[ENA]
¡û
>W2010523794
JAANPT010000003
Gammaproteobacteria
Pseudomonas otitidis 10M [JAANPT]
138664
138753
+
Ser
CGA
[ENA]
¡û
>W2010523838
JAANPU010000001
Gammaproteobacteria
Pseudomonas otitidis 9M [JAANPU]
306831
306920
+
Ser
CGA
[ENA]
¡û
>W2010707457
JACHKV010000001
Gammaproteobacteria
Pseudomonas alcaligenes S00099 [JACHKV]
656098
656187
+
Ser
CGA
[ENA]
¡û
>W2011260804
QJRF01000061
Gammaproteobacteria
Pseudomonas taiwanensis xwS3 [QJRF]
81193
81104
-
Ser
CGA
[ENA]
¡û
>W2011540320
SCOK01000024
Gammaproteobacteria
D(2018) [SCOK]
16599
16510
-
Ser
CGA
[ENA]
¡û
>W2012019856
VFOB01000001
Gammaproteobacteria
Pseudomonas sp. SLBN-26 [VFOB]
5876475
5876564
+
Ser
CGA
[ENA]
¡û
>W2012109526
VOWX01000075
Gammaproteobacteria
Pseudomonas sp. JG-B [VOWX]
196246
196335
+
Ser
CGA
[ENA]
¡û
>W2012433912
WTFN01000042
Gammaproteobacteria
Pseudomonas otitidis 25_K [WTFN]
20059
19970
-
Ser
CGA
[ENA]
¡û
>W2110532948
JAGFDR010000003
Gammaproteobacteria
Pseudomonas otitidis 15988 [JAGFDR]
185999
186088
+
Ser
CGA
[ENA]
¡û
>C211002679
AP021905
Gammaproteobacteria
Pseudomonas sp. Pc102 [AP021905]
4928181
4928092
-
Ser
CGA
-
¡û
>C211003428
AP022213
Gammaproteobacteria
Pseudomonas otitidis WP8-S17-CRE-03 [AP022213]
4648169
4648080
-
Ser
CGA
-
¡û
>C211393943
CP082244
Gammaproteobacteria
Pseudomonas otitidis CSMC7.1 [CP082244]
4728130
4728041
-
Ser
CGA
-
¡û
>C231003414
AP023081
Gammaproteobacteria
Pseudomonas sp. Sm006 [AP023081]
650810
650721
-
Ser
CGA
-
¡û
>C231194700
CP084625
Gammaproteobacteria
Pseudomonas lalkuanensis ACYW.190 [CP084625]
4424802
4424713
-
Ser
CGA
-
¡û
>C231503909
CP106785
Gammaproteobacteria
Pseudomonas tohonis G5.110 [CP106785]
4782808
4782719
-
Ser
CGA
-
¡û
>C231569629
CP115820
Gammaproteobacteria
Pseudomonas tohonis Q4-3 [CP115820]
4800775
4800686
-
Ser
CGA
-
¡û
>C231576770
CP116304
Gammaproteobacteria
Pseudomonas sp. Q1-7 [CP116304]
4441425
4441336
-
Ser
CGA
-
¡û
>C241006489
AP022642
Gammaproteobacteria
Pseudomonas otitidis MrB4 [AP022642]
4607062
4606973
-
Ser
CGA
-
¡û
>C241008033
AP023189
Gammaproteobacteria
Pseudomonas tohonis TUM18999 [AP023189]
4964806
4964717
-
Ser
CGA
-
¡û
>C241078232
CP043311
Gammaproteobacteria
Pseudomonas lalkuanensis PE08 [CP043311]
4622898
4622809
-
Ser
CGA
-
¡û
>C241268690
CP126342
Gammaproteobacteria
Pseudomonas otitidis TL17 [CP126342]
4603090
4603001
-
Ser
CGA
-
¡û
>C241373960
CP143312
Gammaproteobacteria
Pseudomonas sp. JS3066 [CP143312]
4119677
4119588
-
Ser
CGA
-
¡û
>W2310015482
BQHX01000052
Gammaproteobacteria
Pseudomonas otitidis BML-PP029 [BQHX]
8123
8034
-
Ser
CGA
[ENA]
¡û
>W2310029872
BSTZ01000023
Gammaproteobacteria
Pseudomonas resinovorans NBRC 113413 [BSTZ]
66741
66652
-
Ser
CGA
[ENA]
¡û
>W1511525068
JYFT01000085
Gammaproteobacteria
Pseudomonas sp. FeS53a [JYFT]
1987
1898
-
Ser
CGA
[ENA]
¡û
>W1511530359
JYKO01000016
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
85584
85495
-
Ser
CGA
[ENA]
¡û
>W121064873
AJMR01000071
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
1835
1746
-
Ser
CGA
[ENA]
¡û
>W1710084463
BDMA01000028
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
66669
66580
-
Ser
CGA
[ENA]
¡û
>W1710555602
FOJP01000015
Gammaproteobacteria
Pseudomonas otitidis [FOJP]
83707
83618
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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