This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56121 (32 seq.)
>W1711343482
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
5112540
5112453
-
Ser
GGA
[ENA]
¡û
>W1711343532
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
5125896
5125809
-
Ser
GGA
[ENA]
¡û
>W1711343556
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
345827
345914
+
Ser
GGA
[ENA]
¡û
>W1711343654
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2481223
2481136
-
Ser
GGA
[ENA]
¡û
>W1711343713
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
603072
602985
-
Ser
GGA
[ENA]
¡û
>W1711343740
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3592398
3592485
+
Ser
GGA
[ENA]
¡û
>W1711343812
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
1842807
1842720
-
Ser
GGA
[ENA]
¡û
>W1711343848
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3597283
3597370
+
Ser
GGA
[ENA]
¡û
>W1711343935
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
289878
289791
-
Ser
GGA
[ENA]
¡û
>W1711343966
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
6190328
6190241
-
Ser
GGA
[ENA]
¡û
>W1711427954
MIGB01000017
Actinomycetota
Pseudonocardia autotrophica [MIGB]
131821
131908
+
Ser
GGA
[ENA]
¡û
>WENV011119
AACY020302892
Marine microbial communities from Global Ocean Sampling (GOS)
6413
6324
-
Ser
GGA
[ENA]
>WENV011314
AACY020308512
Marine microbial communities from Global Ocean Sampling (GOS)
310
221
-
Ser
GGA
[ENA]
>WENV180360968
OBNU01072633
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
11
97
+
Ser
GGA
[ENA]
¢þ
>WENV019734
AACY020538094
Marine microbial communities from Global Ocean Sampling (GOS)
1023
1112
+
Ser
GGA
[ENA]
>WENV183711472
PDWI01070716
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
80
165
+
Ser
GGA
[ENA]
¢þ
>WENV183715098
PDWI01221226
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
547
462
-
Ser
GGA
[ENA]
¢þ
>WENV183726088
PJQF01078550
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
93
6
-
Ser
GGA
[ENA]
¢þ
>C191005763
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
421234
421147
-
Ser
GGA
-
¡û
>W1910182920
BJNH01000018
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
13507
13420
-
Ser
GGA
[ENA]
¡û
>C151074994
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5315915
5316002
+
Ser
GGA
-
¡û
>C151087165
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
3873109
3873022
-
Ser
GGA
-
¡û
>C151087189
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
5078621
5078708
+
Ser
GGA
-
¡û
>W10118395
ADUJ01000201
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
14739
14652
-
Ser
GGA
[ENA]
¡û
>W10128105
AEGE01000416
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
1395
1482
+
Ser
GGA
[ENA]
¡û
>W11123470
ADUJ01000201
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
14739
14652
-
Ser
GGA
[ENA]
¡û
>W11136817
AEGE01000416
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
1395
1482
+
Ser
GGA
[ENA]
¡û
>C161040324
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
805596
805683
+
Ser
GGA
-
¡û
>C161040383
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2510582
2510669
+
Ser
GGA
[Ensembl]
¡û
>WENV070607
AACY023816194
Marine microbial communities from Global Ocean Sampling (GOS)
175
264
+
Ser
GGA
[ENA]
>WENV070659
AACY023817786
Marine microbial communities from Global Ocean Sampling (GOS)
706
617
-
Ser
GGA
[ENA]
>WENV070732
AACY023820399
Marine microbial communities from Global Ocean Sampling (GOS)
777
688
-
Ser
GGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK