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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56123 (8 seq.)
>W1710776567
LIZW01000027
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
30038
30124
+
Ser
TGA
[ENA]
¡û
>W1711137203
LVBB01000148
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
75647
75733
+
Ser
TGA
[ENA]
¡û
>WENV183514817
OMKS01033273
[OMKS] sediment metagenome; hot spring sediment
112
198
+
Ser
TGA
[ENA]
¡û
>WENV183516545
OMKS01202018
[OMKS] sediment metagenome; hot spring sediment
137
223
+
Ser
TGA
[ENA]
¡û
>WENV170972393
MTKX01028826
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1409
1495
+
Ser
TGA
[ENA]
¡û
>WENV170979319
MTKZ01084365
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3228
3314
+
Ser
TGA
[ENA]
¡û
>W1610640673
LIZW01000027
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
30038
30124
+
Ser
TGA
[ENA]
¡û
>W1610948323
LVBB01000148
Planctomycetota
Phycisphaerales bacterium Planc_01 [LVBB]
75647
75733
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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