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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56146 (20 seq.)
>C171089508
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3944803
3944890
+
Leu
TAA
-
¡û
>C171089515
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5473928
5474015
+
Leu
TAA
-
¡û
>W141075069
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
178622
178535
-
Leu
TAA
[ENA]
¡û
>W141075071
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
158427
158340
-
Leu
TAA
[ENA]
¡û
>W141075073
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
157873
157786
-
Leu
TAA
[ENA]
¡û
>WENV183732553
PJTX01001981
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4351
4266
-
Leu
TAA
[ENA]
¢þ
>WENV183735012
PJUA01000371
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183735167
PJUA01001608
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4731
4646
-
Leu
TAA
[ENA]
¢þ
>WENV183735196
PJUA01002383
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3286
3201
-
Leu
TAA
[ENA]
¢þ
>W1910378070
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
68530
68615
+
Leu
TAA
[ENA]
¡û
>W1910378072
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
76437
76522
+
Leu
TAA
[ENA]
¡û
>W1910378074
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
77035
77120
+
Leu
TAA
[ENA]
¡û
>W1910664349
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
293130
293045
-
Leu
TAA
[ENA]
¡û
>W1910664373
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
132857
132772
-
Leu
TAA
[ENA]
¡û
>W1810503633
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
216592
216507
-
Leu
TAA
[ENA]
¡û
>W1810503635
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
208925
208840
-
Leu
TAA
[ENA]
¡û
>W1810503637
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
208367
208282
-
Leu
TAA
[ENA]
¡û
>C151047401
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1442090
1442003
-
Leu
TAA
[Ensembl]
¡û
>C151047403
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1428191
1428104
-
Leu
TAA
[Ensembl]
¡û
>C151047405
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1427638
1427551
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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