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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.562568 (13 seq.)
>W131182381
ARQI01000100
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
1479
1406
-
Thr
TGT
[ENA]
¡û
>WENV180116940
OARB01000155
[OARB] human gut metagenome; ENVO:feces
1601
1528
-
Thr
TGT
[ENA]
¢þ
>WENV180117710
OARM01000013
[OARM] human gut metagenome; ENVO:feces
104936
105009
+
Thr
TGT
[ENA]
¢þ
>W141275730
JADF01000013
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
46334
46407
+
Thr
TGT
[ENA]
¡û
>W09108436
ABTG01000006
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
28270
28343
+
Thr
TGT
[ENA]
¡û
>W1910000032
AFQM01000048
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
19336
19263
-
Thr
TGT
[ENA]
¡û
>W1910569131
JJMJ01000056
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
12720
12647
-
Thr
TGT
[ENA]
¡û
>W1910574887
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2562741
2562668
-
Thr
TGT
[ENA]
¡û
>C10101956
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1921456
1921383
-
Thr
TGT
[Ensembl]
¡û
>C10101991
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1269678
1269605
-
Thr
TGT
[Ensembl]
¡û
>C131001487
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1956578
1956651
+
Thr
TGT
[Ensembl]
¡û
>C131003823
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2635261
2635334
+
Thr
TGT
[Ensembl]
¡û
>C131019663
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2808856
2808783
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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